Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d035880_P001 | Maize | plastid | 71.86 | 74.48 |
| TraesCS2B01G610300.1 | Wheat | cytosol, peroxisome, plastid | 90.95 | 44.04 |
| EES13145 | Sorghum | cytosol, nucleus, plastid | 85.93 | 41.4 |
| Zm00001d026678_P001 | Maize | plastid | 84.92 | 41.32 |
| TraesCS2D01G588100.1 | Wheat | plastid | 91.46 | 40.9 |
| Zm00001d002882_P001 | Maize | cytosol, nucleus, plastid | 83.92 | 40.83 |
| TraesCS2A01G577100.1 | Wheat | cytosol, plasma membrane, plastid | 91.46 | 40.35 |
| Os04t0686700-01 | Rice | plastid | 85.43 | 40.0 |
| GSMUA_Achr8P07870_001 | Banana | cytosol, peroxisome, plastid | 53.77 | 25.97 |
| Bra003700.1-P | Field mustard | cytosol, nucleus, peroxisome, plastid | 47.74 | 25.82 |
| CDY48548 | Canola | cytosol, nucleus, peroxisome, plastid | 47.74 | 25.82 |
| AT1G76920.1 | Thale cress | cytosol | 48.24 | 25.67 |
| CDX68078 | Canola | cytosol, nucleus, peroxisome, plastid | 47.24 | 25.54 |
| Solyc04g071130.1.1 | Tomato | extracellular | 47.74 | 25.2 |
| VIT_18s0076g00350.t01 | Wine grape | cytosol | 47.24 | 25.13 |
| PGSC0003DMT400002094 | Potato | cytosol | 47.24 | 24.93 |
| HORVU2Hr1G124540.2 | Barley | cytosol | 44.72 | 24.93 |
| KRH70323 | Soybean | cytosol | 45.73 | 24.8 |
| Zm00001d009851_P001 | Maize | nucleus, peroxisome, plasma membrane | 42.21 | 16.5 |
| Zm00001d003753_P001 | Maize | cytosol | 6.03 | 13.48 |
| Zm00001d047158_P001 | Maize | cytosol | 6.03 | 13.48 |
| Zm00001d024013_P001 | Maize | cytosol | 8.54 | 6.51 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G184400.1 | EnsemblPlantsGene:TraesCS4A01G184400 | SEG:seg | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr4A:+:462309235..462309875
Molecular Weight (calculated)
21479.0 Da
IEP (calculated)
9.307
GRAVY (calculated)
-0.051
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MKHPLSLPSK PRSPILACTP LRSQWKLFSY PLARLTGGWA PVERASWGDV FEILKRPRLL AGAGGRHVLM IAGLRSSFAL DAPCSTVLLL RLNLATMEWG
101: EAGRMPPNMY CCFTGLCEAT AQASAMPAPV ANGNNKVKVF GGDGKVWFGG KRARGKLAMW EEDDIGSSGG NWDWVDGVPG YGDGVYRSFV FDGGFTAIP
101: EAGRMPPNMY CCFTGLCEAT AQASAMPAPV ANGNNKVKVF GGDGKVWFGG KRARGKLAMW EEDDIGSSGG NWDWVDGVPG YGDGVYRSFV FDGGFTAIP
001: MESSPVNCLP PDSLHQIFSS LPIRDIMICR SVCKFFNQLL TSQCFIEIIS TRPPLNLLAL RPPHHHHSHR HSGNGHATNI RPYIHVYDPE QNQWFRFNLD
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
101: FLPFRSPQPV ASSSGLIYLW GDSIDLAESS KSLVACNPLT RQFKVLPQLG SAWSRHGTVL VDSVNRVMVL TELAALYYSG TVVANQWLKF SSNLPSKPRS
201: PVLMSSSVFA LCDVGSPWRS QWKLFSCKLT NLTITHTNWV CLEKHEWGDI FDIIKRPRLL RGNGDSKLLM IGGLKSTFSL NPACSTILIL RLDLESLEWE
301: EAGRMPLEMY RGFQESSKFK VFGGGDRVYF SAKRMGKLAM WDCWQGWRWI EGVPGYADGL CRGFVFDAKL TLMP
Arabidopsis Description
SKIP15SKP1-interacting partner 15 [Source:UniProtKB/Swiss-Prot;Acc:O49279]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.