Factsheet for Bra016980.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX93167	Canola	nucleus	95.91	95.63
CDY06974	Canola	nucleus	97.66	94.89
Bra004582.1-P	Field mustard	nucleus	91.23	87.64
AT2G40620.1	Thale cress	nucleus	90.64	84.47
Bra000195.1-P	Field mustard	nucleus	69.59	71.26
PGSC0003DMT400042946	Potato	plastid	57.89	61.11
VIT_13s0067g02900.t01	Wine grape	nucleus	61.7	58.77
Solyc06g049040.2.1	Tomato	nucleus	55.56	57.4
Solyc06g048630.2.1	Tomato	nucleus	58.48	57.31
PGSC0003DMT400070968	Potato	nucleus	58.48	57.31
Bra030663.1-P	Field mustard	nucleus	46.78	50.0
Bra031541.1-P	Field mustard	nucleus	46.2	48.77
KRH53733	Soybean	nucleus	24.56	47.73
KRH64202	Soybean	nucleus	40.64	46.96
Bra034916.1-P	Field mustard	nucleus, plastid	27.49	35.74
Bra021735.1-P	Field mustard	nucleus	35.09	35.4
Bra018250.1-P	Field mustard	nucleus	37.43	34.22
Bra030637.1-P	Field mustard	nucleus	38.01	34.12
Bra015471.1-P	Field mustard	nucleus	38.3	33.42
Bra032191.1-P	Field mustard	nucleus	29.82	30.91
Bra035464.1-P	Field mustard	nucleus	14.91	28.98
Bra010722.1-P	Field mustard	nucleus	33.92	26.07
Bra033582.1-P	Field mustard	nucleus	33.63	25.78
Bra031172.1-P	Field mustard	nucleus	26.32	23.94
Bra030314.1-P	Field mustard	plastid	31.29	23.26
Bra004689.1-P	Field mustard	nucleus, plastid	18.71	20.91
Bra034913.1-P	Field mustard	nucleus	13.16	20.27
Bra003320.1-P	Field mustard	nucleus	17.84	20.07
Bra007380.1-P	Field mustard	nucleus	18.13	19.5
Bra031173.1-P	Field mustard	plastid	19.59	17.31
Bra027885.1-P	Field mustard	nucleus	18.71	17.16
Bra000256.1-P	Field mustard	nucleus, plastid	18.13	17.13
Bra009426.1-P	Field mustard	mitochondrion, nucleus	11.7	13.03

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	EnsemblPlantsGene:Bra016980	EnsemblPlants:Bra016980.1	EnsemblPlants:Bra016980.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003700	GO:GO:0005488	GO:GO:0006139
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR004827
UniProt:M4DKF1	PFAM:PF00170	PFscan:PS50217	PANTHER:PTHR13690	PANTHER:PTHR13690:SF103	SMART:SM00338
SUPFAM:SSF57959	UniParc:UPI0002545117	InterPro:bZIP	SEG:seg	:	:

Description

AT2G40620 (E=2e-133) | bZIP transcription factor family protein

Coordinates

chrA04:-:17288260..17290610

Molecular Weight (calculated)

38385.5 Da

IEP (calculated)

6.457

GRAVY (calculated)

-0.935

Length

342 amino acids

Sequence
(BLAST)

001: MDDPSNAKSN QCPPPTSTPF RGPYHRRAHS EVQFRLPEDL DLSEPFGGFE DLGSEDDLFC SYMDIEKLGS GSDSAGPSAL RSDNPFPEAG DSRPRHRPSL
101: SVDGGSSTLE SIEAKKAMAP DKLAELWVVD PKRAKRIMAN RQSAARSKER KARYIMELER KVQTLQTEAT TLSAQLSLFQ RDTTGLSSEN TELKLRLQVM
201: EQQAKLRDAL NDQLKKEVER LKFATGEVSH ADAYNLQMSH MQYSQQPQQQ SFFQHHHQQQ QQADAQNLQQ MTHQFHLFQP NNNQNPQLMH HATSNSSGQS
301: HSFAEAMHED HLGRLQGLDI SSCGRGSNFG RSDTVSESSS TM

Best Arabidopsis Sequence Match ( AT2G40620.1 )
(BLAST)

001: MEDPSNPQPN QSNLSQCPPL ATAPTPAPVR GPYHRRAHSE VQFRLPEDLD LSEPFGGFDE LGSEDDLFCS YMDIEKLGSG SGSASDSAGP SAPRSDNPFS
101: AENGGAEAGN SRPRHRHSLS VDGSSTLESI EAKKAMAPDK LAELWVVDPK RAKRIIANRQ SAARSKERKA RYILELERKV QTLQTEATTL SAQLSLFQRD
201: TTGLSSENTE LKLRLQVMEQ QAKLRDALNE QLKKEVERLK FATGEVSPAD AYNLGMAHMQ YQQQPQQSFF QHHHQQQTDA QNLQQMTHQF HLFQPNNNQN
301: QSSRTNPPTA HQLMHHATSN APAQSHSYSE AMHEDHLGRL QGLDISSCGR GSNFGRSDTV SESSSTM

Arabidopsis Description

BZIP18bZIP transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:O22873]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.