Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400004178 | Potato | nucleus | 98.11 | 98.96 |
| KRH24356 | Soybean | nucleus | 65.98 | 70.07 |
| KRH29330 | Soybean | nucleus | 65.64 | 68.58 |
| VIT_03s0038g00860.t01 | Wine grape | nucleus | 78.52 | 67.6 |
| Solyc04g081190.2.1 | Tomato | nucleus | 39.18 | 51.35 |
| Solyc06g049040.2.1 | Tomato | nucleus | 24.4 | 42.9 |
| Solyc06g048630.2.1 | Tomato | nucleus | 24.74 | 41.26 |
| Solyc06g060490.2.1 | Tomato | nucleus | 19.42 | 40.79 |
| Solyc06g053350.2.1 | Tomato | plastid | 28.35 | 38.02 |
| Solyc04g071160.2.1 | Tomato | nucleus | 21.48 | 36.66 |
| Solyc07g062710.2.1 | Tomato | nucleus, plastid | 13.92 | 26.82 |
| Solyc12g010800.1.1 | Tomato | nucleus | 13.75 | 26.14 |
| Solyc07g053450.2.1 | Tomato | nucleus | 12.71 | 26.06 |
| Solyc11g020950.1.1 | Tomato | nucleus | 11.86 | 21.17 |
| Solyc11g006490.1.1 | Tomato | nucleus | 10.48 | 19.87 |
| Solyc10g044830.1.1 | Tomato | nucleus | 6.53 | 15.38 |
Protein Annotations
| Gene3D:1.20.5.170 | MapMan:15.5.4.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0003700 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR004827 | UniProt:K4B3R1 | PFAM:PF00170 | PFscan:PS50217 | PANTHER:PTHR13690 | PANTHER:PTHR13690:SF76 |
| SMART:SM00338 | SUPFAM:SSF57959 | EnsemblPlantsGene:Solyc01g110480.2 | EnsemblPlants:Solyc01g110480.2.1 | UniParc:UPI0002768FAE | InterPro:bZIP |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr1:+:97179797..97182822
Molecular Weight (calculated)
63707.1 Da
IEP (calculated)
7.396
GRAVY (calculated)
-0.849
Length
582 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGDNDEGHS DMVQRLQSSF GTSSSSLPKQ LQPISMNQLD IPQLTTSQFR GQMRQFSPNF GVENSKRVGI PPSHPQMPPI SPYSQIPVTR PGNQQMGMQN
101: FTSAGPSHSR SLSQPAFFSL DSLPPLSPSP YRESPSTSMS DPISADVSMG DQDGNSHSLL PPTPFSRCNS SRAGESLPPR KAHRRSNSDI PFGFSGIMQS
201: SPPLVPLRSP GALERSVPSR DNLGGKPVQL VKRESMWERG NDNNNVEGMG ERKSEGEVVD DLFSAYMNLD NIDAFNSSGT DEKLGIENRE DLDSRASGTK
301: TNGGDSSDNE ATSSVNDSSS GSMQKREGVK RSAVGDIAPT TRHYRSVSMD SFMGKLNFID DSPKLPPSPG PRPGQLSPTN SLDGNSNSFS LEFGNGEFSG
401: AELKKIMANE KLAEIALADP KRAKRILANR QSAARSKERK MRYIAELEHK VQTLQTEATT LSAQLTLLQR DATGLTSQNS ELKFRLQAME QQAQLRDALN
501: EALTAEVQRL KIATAELSAD ASKFQQLSLN PQMFQSQQQQ SNQLNMHQLQ QQQQQQQSSQ PQQHAQARQQ LNSSTTSKHE SK
101: FTSAGPSHSR SLSQPAFFSL DSLPPLSPSP YRESPSTSMS DPISADVSMG DQDGNSHSLL PPTPFSRCNS SRAGESLPPR KAHRRSNSDI PFGFSGIMQS
201: SPPLVPLRSP GALERSVPSR DNLGGKPVQL VKRESMWERG NDNNNVEGMG ERKSEGEVVD DLFSAYMNLD NIDAFNSSGT DEKLGIENRE DLDSRASGTK
301: TNGGDSSDNE ATSSVNDSSS GSMQKREGVK RSAVGDIAPT TRHYRSVSMD SFMGKLNFID DSPKLPPSPG PRPGQLSPTN SLDGNSNSFS LEFGNGEFSG
401: AELKKIMANE KLAEIALADP KRAKRILANR QSAARSKERK MRYIAELEHK VQTLQTEATT LSAQLTLLQR DATGLTSQNS ELKFRLQAME QQAQLRDALN
501: EALTAEVQRL KIATAELSAD ASKFQQLSLN PQMFQSQQQQ SNQLNMHQLQ QQQQQQQSSQ PQQHAQARQQ LNSSTTSKHE SK
001: MGDTEKCNSD MIQRLHSSFG TTSSSIPKNP ISQLDLNPNF IRSSAPQFSK PFSDSGKRIG VPPSHPNLIP PTSPFSQIPT TRQPGSHNFN PGGANHSRSM
101: SQPNSFFSFD SLPPLSPSPF RDHDVSMEDR DSGVFNSNHS LPPSPFTRCN STSSSSLRVG ESLPPRKSHR RSNSDIPSGF NSMPLIPPRP LERSFSGGEC
201: ADWSKSNPFV KKESSCEREG VGEREAMDDL FSAYMNLENI DVLNSSEADD SKNGNENRDD MESSRASGTK TNGSDTEGES SSVNESANNN MNSSGEKRES
301: VKRRAAGGDI APTTRHYRSV SVDSCFMEKL SFGDESLKPP PSPGSMSRKV SPTNSVDGNS GAAFSIEFNN GEFTAAEMKK IMANDKLAEM AMSDPKRVKR
401: ILANRQSAAR SKERKMRYIV ELEHKVQTLQ TEATTLSAQL TLLQRDMMGL TNQNNELKFR LQAMEQQARL RDALNEALNG EVQRLKLAIG ESSQNESERS
501: KMQSLNAEMF QQLNISQLRQ QPQQMQQQSH QQNHQNGTMA TKSESNE
101: SQPNSFFSFD SLPPLSPSPF RDHDVSMEDR DSGVFNSNHS LPPSPFTRCN STSSSSLRVG ESLPPRKSHR RSNSDIPSGF NSMPLIPPRP LERSFSGGEC
201: ADWSKSNPFV KKESSCEREG VGEREAMDDL FSAYMNLENI DVLNSSEADD SKNGNENRDD MESSRASGTK TNGSDTEGES SSVNESANNN MNSSGEKRES
301: VKRRAAGGDI APTTRHYRSV SVDSCFMEKL SFGDESLKPP PSPGSMSRKV SPTNSVDGNS GAAFSIEFNN GEFTAAEMKK IMANDKLAEM AMSDPKRVKR
401: ILANRQSAAR SKERKMRYIV ELEHKVQTLQ TEATTLSAQL TLLQRDMMGL TNQNNELKFR LQAMEQQARL RDALNEALNG EVQRLKLAIG ESSQNESERS
501: KMQSLNAEMF QQLNISQLRQ QPQQMQQQSH QQNHQNGTMA TKSESNE
Arabidopsis Description
Basic-leucine zipper (BZIP) transcription factor family protein [Source:UniProtKB/TrEMBL;Acc:Q9T0J7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.