CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71974
CDX73678
CDX80722
CDX92401
CDX95314
CDX98266
CDY06053
CDY06478
CDY23174
CDY30752
CDY48943
CDY56238
CDY71925

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G58120.1	CDX80722	AT1G43700.1	17719007
AT3G58120.1	CDY30752	AT1G43700.1	17719007
AT3G58120.1	CDY48943	AT1G43700.1	17719007
AT3G58120.1	CDY71925	AT1G43700.1	17719007
AT3G58120.1	CDX73678	AT3G51920.1	17360592
AT3G58120.1	CDX95314	AT3G51920.1	17360592
AT3G58120.1	CDY23174	AT3G51920.1	17360592
AT3G58120.1	CDX71974	AT3G58120.1	17719007
AT3G58120.1	CDX98266	AT3G58120.1	17719007
AT3G58120.1	CDY06053	AT3G58120.1	17719007
AT3G58120.1	CDY56238	AT3G58120.1	17719007
AT3G58120.1	CDY06478	AT4G14640.1	17360592
AT3G58120.1	CDX92401	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06053	Canola	nucleus	95.88	90.14
CDY56238	Canola	extracellular	41.2	82.09
CDX98266	Canola	nucleus, plastid	91.39	81.88
AT3G58120.1	Thale cress	nucleus	91.01	73.86
CDY22561	Canola	nucleus, plastid	72.66	72.39
CDY35379	Canola	nucleus, plastid	72.66	72.39
CDY64520	Canola	nucleus, plastid	69.66	68.13
CDX79872	Canola	nucleus, plastid	71.16	67.86
CDX71000	Canola	nucleus, plastid	70.79	67.74
KRH22317	Soybean	nucleus	65.92	56.59
VIT_12s0028g02590.t01	Wine grape	nucleus, plastid	61.8	55.93
KRH27013	Soybean	nucleus	66.67	55.62
PGSC0003DMT400024289	Potato	nucleus	60.67	53.47
KRH55826	Soybean	nucleus, plastid	67.79	53.24
KRH25692	Soybean	nucleus, plastid	65.54	53.03
Solyc12g010800.1.1	Tomato	nucleus	59.55	51.96
PGSC0003DMT400020206	Potato	nucleus	58.43	51.15
Solyc07g053450.2.1	Tomato	nucleus	52.81	49.65
CDY23807	Canola	nucleus	29.21	23.21
CDY46864	Canola	nucleus	28.84	23.05
CDY48943	Canola	nucleus	19.48	21.58
CDY35020	Canola	nucleus	13.86	21.02
CDY29162	Canola	nucleus	28.84	20.59
CDY39913	Canola	nucleus	28.46	20.49
CDX86512	Canola	nucleus	24.34	20.44
CDY06231	Canola	nucleus	24.72	20.31
CDY15590	Canola	nucleus	24.34	20.25
CDY09952	Canola	nucleus	24.72	20.12
CDY19094	Canola	nucleus	23.22	19.5
CDX80722	Canola	nucleus	23.22	19.25
CDY48939	Canola	nucleus	21.35	18.45
CDY44883	Canola	mitochondrion, nucleus	20.97	18.3
CDY30752	Canola	nucleus	22.47	18.18
CDY71925	Canola	nucleus	17.23	18.11
CDY15381	Canola	nucleus	25.09	18.11
CDY10799	Canola	nucleus	25.09	18.06
CDY56611	Canola	nucleus	24.72	17.93
CDX70198	Canola	mitochondrion, nucleus	20.6	17.92
CDY15560	Canola	nucleus	25.47	17.85
CDX86537	Canola	nucleus	25.84	17.56
CDY24896	Canola	nucleus	22.1	17.4
CDY13830	Canola	nucleus, plastid	19.85	17.26
CDX80717	Canola	nucleus, plastid	20.6	17.19
CDY06974	Canola	nucleus	22.47	17.05
CDX93167	Canola	nucleus	21.72	16.91
CDY23889	Canola	nucleus	22.47	16.9
CDY47713	Canola	nucleus	24.72	16.84
CDY10170	Canola	nucleus	24.72	16.79
CDX79976	Canola	nucleus	22.1	16.57
CDX82008	Canola	nucleus	21.35	15.32
CDY07597	Canola	nucleus	18.35	14.67
CDY15909	Canola	plastid	23.97	14.41
CDY12108	Canola	nucleus	22.85	14.32
CDX72732	Canola	nucleus	23.6	14.29
CDX99610	Canola	nucleus	23.6	14.25
CDY22407	Canola	nucleus	22.85	13.71
CDY13828	Canola	plastid	19.85	13.7
CDY70502	Canola	nucleus	19.48	13.47
CDX90298	Canola	nucleus	22.1	13.47
CDX82009	Canola	plastid	19.1	13.32
CDY13829	Canola	cytosol	0.37	9.09

Protein Annotations

Gene3D:1.20.5.170	MapMan:15.5.4.1	GO:A0A078C733	EnsemblPlants:CDX71974	ProteinID:CDX71974	ProteinID:CDX71974.1
ncoils:Coil	GO:GO:0003674	GO:GO:0003700	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00155741001	InterPro:IPR004827	PFAM:PF00170
ScanProsite:PS00036	PFscan:PS50217	PANTHER:PTHR13301	PANTHER:PTHR13301:SF134	SMART:SM00338	SUPFAM:SSF57959
UniParc:UPI0004EE8160	InterPro:bZIP	SEG:seg	:	:	:

Description

BnaC08g29000D

Coordinates

chrLK031795:+:1573664..1576040

Molecular Weight (calculated)

30020.0 Da

IEP (calculated)

10.039

GRAVY (calculated)

-0.858

Length

267 amino acids

Sequence
(BLAST)

001: MAQLPPKIPT MTTTTTPHWP DFSSQKLPSI AATAAATFLD FSSTRRGTHR RSISDSIAFL EAPSSGVGNH HFDRFDDEQF MSMFNDDVHQ NHHNNNHNNH
101: HGSVNGNVDE VQSQCKTEPQ DGAPSSANQN SGGSSGNRIN DPKRVKRILA NRQSAQRSRV RKLQYISELE RSVTSLQTEV SVLSPRVAFL DHQRLLLNVD
201: NSAIKQRIAA LAQDKIFKDA HQEALRREIE RLRQVYHQQS LKKMENNVSD QSPADIKPSV EKKQLNA

Best Arabidopsis Sequence Match ( AT3G58120.1 )
(BLAST)

001: MAQLPPKIPT MTTPNWPDFS SQKLPSIAAT AAAAATAGPQ QQNPSWMDEF LDFSATRRGT HRRSISDSIA FLEPPSSGVG NHHFDRFDDE QFMSMFNDDV
101: HNNNHNHHHH HSINGNVGPT RSSSNTSTPS DHNSLSDDDN NKEAPPSDHD HHMDNNVANQ NNAAGNNYNE SDEVQSQCKT EPQDGPSANQ NSGGSSGNRI
201: HDPKRVKRIL ANRQSAQRSR VRKLQYISEL ERSVTSLQTE VSVLSPRVAF LDHQRLLLNV DNSAIKQRIA ALAQDKIFKD AHQEALKREI ERLRQVYHQQ
301: SLKKMENNVS DQSPADIKPS VEKEQLLNV

Arabidopsis Description

BZIP61BZIP61 [Source:UniProtKB/TrEMBL;Acc:A0A178VLL5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.