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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus, plastid

Predictor Summary:
  • nucleus 4
  • plastid 4
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY22561 Canola nucleus, plastid 96.64 96.64
CDY64520 Canola nucleus, plastid 76.49 75.09
CDX79872 Canola nucleus, plastid 77.99 74.64
CDX71000 Canola nucleus, plastid 77.24 74.19
CDX71974 Canola nucleus, plastid 72.39 72.66
AT2G42380.2 Thale cress nucleus, plastid 82.46 68.85
CDY06053 Canola nucleus 72.01 67.96
CDY56238 Canola extracellular 33.58 67.16
CDX98266 Canola nucleus, plastid 74.25 66.78
Bra000256.1-P Field mustard nucleus, plastid 85.45 63.26
KRH22317 Soybean nucleus 65.67 56.59
KRH27013 Soybean nucleus 66.42 55.62
VIT_12s0028g02590.t01 Wine grape nucleus, plastid 60.82 55.25
PGSC0003DMT400024289 Potato nucleus 60.07 53.14
KRH25692 Soybean nucleus, plastid 63.06 51.21
KRH55826 Soybean nucleus, plastid 64.93 51.18
Solyc07g053450.2.1 Tomato nucleus 53.36 50.35
Solyc12g010800.1.1 Tomato nucleus 57.09 50.0
PGSC0003DMT400020206 Potato nucleus 55.97 49.18
CDY23807 Canola nucleus 29.48 23.51
CDY46864 Canola nucleus 29.1 23.35
CDX86512 Canola nucleus 24.63 20.75
CDY29162 Canola nucleus 28.73 20.59
CDY15590 Canola nucleus 24.63 20.56
CDY39913 Canola nucleus 28.36 20.49
CDY48943 Canola nucleus 18.28 20.33
CDY06231 Canola nucleus 24.63 20.31
CDY09952 Canola nucleus 24.63 20.12
CDY35020 Canola nucleus 13.06 19.89
CDY19094 Canola nucleus 23.13 19.5
CDY48939 Canola nucleus 22.01 19.09
CDY44883 Canola mitochondrion, nucleus 21.64 18.95
CDX70198 Canola mitochondrion, nucleus 21.27 18.57
CDX80722 Canola nucleus 22.01 18.32
CDX80717 Canola nucleus, plastid 21.64 18.12
CDY71925 Canola nucleus 17.16 18.11
CDY15381 Canola nucleus 25.0 18.11
CDY24896 Canola nucleus 22.76 17.99
CDY10799 Canola nucleus 24.63 17.79
CDY56611 Canola nucleus 24.25 17.66
CDY06974 Canola nucleus 22.76 17.33
CDY30752 Canola nucleus 21.27 17.27
CDY15560 Canola nucleus 24.25 17.06
CDX93167 Canola nucleus 21.64 16.91
CDX86537 Canola nucleus 24.63 16.79
CDY23889 Canola nucleus 22.01 16.62
CDY13830 Canola nucleus, plastid 19.03 16.61
CDX79976 Canola nucleus 21.64 16.29
CDY47713 Canola nucleus 23.51 16.07
CDY10170 Canola nucleus 23.51 16.03
CDY07597 Canola nucleus 19.03 15.27
CDX82008 Canola nucleus 20.52 14.78
CDY15909 Canola plastid 23.13 13.96
CDX99610 Canola nucleus 22.76 13.8
CDY12108 Canola nucleus 21.64 13.62
CDX72732 Canola nucleus 22.39 13.61
CDY22407 Canola nucleus 21.64 13.03
CDY13828 Canola plastid 18.66 12.92
CDX90298 Canola nucleus 20.9 12.79
CDY70502 Canola nucleus 18.28 12.69
CDX82009 Canola plastid 17.91 12.53
CDY13829 Canola cytosol 0.37 9.09
Protein Annotations
Gene3D:1.20.5.170MapMan:15.5.4.1GO:A0A078HD62UniProt:A0A078HD62EnsemblPlants:CDY35379ProteinID:CDY35379
ProteinID:CDY35379.1ncoils:CoilGO:GO:0003674GO:GO:0003676GO:GO:0003677GO:GO:0003700
GO:GO:0005488GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058
GO:GO:0009987EnsemblPlantsGene:GSBRNA2T00058357001InterPro:IPR004827PFAM:PF00170ScanProsite:PS00036PFscan:PS50217
PANTHER:PTHR13301PANTHER:PTHR13301:SF134SMART:SM00338SUPFAM:SSF57959UniParc:UPI0004EDBA92InterPro:bZIP
SEG:seg:::::
Description
BnaA03g19810DBnaA03g19810D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HD62]
Coordinates
chrLK032351:+:46167..48266
Molecular Weight (calculated)
30726.0 Da
IEP (calculated)
7.741
GRAVY (calculated)
-0.859
Length
268 amino acids
Sequence
(BLAST)
001: MAQLPPKIPN MTPHWPDFSQ KLSHFSTVAA SSAFLDFSAC RRGNHRRSIS DSIAFLEAPI VTSNMEEHNF DKFDDEQFMS MFTEDDDDLR NNPSHNNKNV
101: GPNTNNNRND EVRSQCKTEP EDGTASSNNS GDSSSNRIID PKRVKRILAN RQSAQRSRVR KLQYISELER SITSLQSEVS VLSPRVAFLD HQRLLLNVDN
201: SALKQRIAAL AQDKIFKDTH QESLKREIER LRQVYQQQSF KKMENANHLP ETGVDIKLSI EKEQMLNI
Best Arabidopsis Sequence Match ( AT2G42380.2 )
(BLAST)
001: MAQLPPKIPN MTQHWPDFSS QKLSPFSTPT ATAVATATTT VQNPSWVDEF LDFSASRRGN HRRSISDSIA FLEAPTVSIE DHQFDRFDDE QFMSMFTDDD
101: NLHSNPSHIN NKNNNVGPTG SSSNTSTPSN SFNDDNKELP PSDHNMNNNI NNNYNDEVQS QCKMEPEDGT ASNNNSGDSS GNRILDPKRV KRILANRQSA
201: QRSRVRKLQY ISELERSVTS LQAEVSVLSP RVAFLDHQRL LLNVDNSALK QRIAALSQDK LFKDAHQEAL KREIERLRQV YNQQSLTNVE NANHLSATGA
301: GATPAVDIKS SVETEQLLNV S
Arabidopsis Description
BZIP34Basic leucine zipper 34 [Source:UniProtKB/Swiss-Prot;Acc:F4IN23]
SUBAcon: [nucleus,plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.