Factsheet for HORVU6Hr1G075250.5

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G303300.1	Wheat	plastid	86.4	80.0
TraesCS6D01G282900.1	Wheat	plastid	85.4	79.07
Os02t0750400-01	Rice	cytosol	33.2	78.3
TraesCS6B01G332800.1	Wheat	plastid	82.0	72.44
KXG30749	Sorghum	plastid	66.4	66.67
Zm00001d052240_P001	Maize	plastid	66.4	66.53
PGSC0003DMT400033331	Potato	plastid	51.2	53.67
Solyc04g054270.2.1	Tomato	plastid	51.2	53.56
GSMUA_Achr5P22880_001	Banana	plastid	54.6	53.53
VIT_07s0031g01360.t01	Wine grape	plastid	52.0	53.17
CDY41990	Canola	plastid	49.0	52.02
CDY42639	Canola	plastid	49.2	50.93
KRH59429	Soybean	plastid	50.8	50.5
Bra011847.1-P	Field mustard	plastid	48.8	50.21
KRH43291	Soybean	plastid	51.2	48.67
AT4G39620.1	Thale cress	plastid	47.2	41.92
HORVU7Hr1G027800.8	Barley	cytosol	19.8	20.41
HORVU4Hr1G086600.3	Barley	plastid	18.4	18.55
HORVU4Hr1G024360.2	Barley	endoplasmic reticulum, vacuole	20.0	17.3
HORVU0Hr1G007320.4	Barley	cytosol	15.6	16.92
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	16.6	16.27
HORVU2Hr1G035060.2	Barley	cytosol	17.8	14.24
HORVU2Hr1G043170.1	Barley	mitochondrion	16.4	12.41
HORVU3Hr1G114340.4	Barley	mitochondrion	14.8	11.67
HORVU6Hr1G032270.20	Barley	cytosol, mitochondrion	14.4	11.16
HORVU7Hr1G111000.5	Barley	plastid	18.2	11.15
HORVU5Hr1G114630.1	Barley	mitochondrion	16.6	9.96
HORVU2Hr1G056820.1	Barley	plastid	16.2	9.89
HORVU5Hr1G022350.1	Barley	plastid	9.4	9.14

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A287UQ89	GO:GO:0000003	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0007275	GO:GO:0008150	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
EnsemblPlantsGene:HORVU6Hr1G075250	EnsemblPlants:HORVU6Hr1G075250.5	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF490	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000B475F8F	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrchr6H:-:518603835..518606535

Molecular Weight (calculated)

55221.1 Da

IEP (calculated)

10.131

GRAVY (calculated)

-0.451

Length

500 amino acids

Sequence
(BLAST)

001: ASGGGRAPGM GRRTPPPRPR SWCGSSCAGP TAARTGWCPC WTATSRWSAP STASSSSRSS AAATAGSSAS RWMQKQRWYV ADNGIYSKLI SVMGRKGQIR
101: MAMWLFSQMR NSGCKPDTSV YNSLIGAHLH SRDKSKALVK ALGYFDKMKG MERCQPNIVT YNILLRACAR ASDTKQVDIL FKDLDESIVS PDIYTYNGVI
201: DGYGKNGMIT EMESVLVRMK SKQCRPDVIT FNILIDSYGR KQTFDKMEQV FKSLLRSKER PTHPTFNSMI TNYGKARLRE KAESVIEKMQ ELGFKPNYVT
301: QECLINMYAY CDCVSKAQQI FDELVSSQST VPLSSLNAML DAYCMNRLPM EADRLLDTAI EKGVVPSAST YKLLYRAYTR ANDKMLVQKL LQRMNKQGIV
401: PNKKFFLDAL EAFGTSANKS RRVQTSNSAR GSSRDSANNS EMASSGKPVL STLEAVSASE KKIRILPNSN SASKPDTGSE SSSEIATSSK PELSFSRVAS

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.