CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43291	Soybean	plastid	94.23	90.11
VIT_07s0031g01360.t01	Wine grape	plastid	66.8	68.71
CDY41990	Canola	plastid	62.82	67.09
PGSC0003DMT400033331	Potato	plastid	62.82	66.25
Solyc04g054270.2.1	Tomato	plastid	62.82	66.11
CDY42639	Canola	plastid	63.22	65.84
Bra011847.1-P	Field mustard	plastid	62.23	64.4
GSMUA_Achr5P22880_001	Banana	plastid	61.23	60.39
KXG30749	Sorghum	plastid	57.85	58.43
Zm00001d052240_P001	Maize	plastid	57.46	57.92
AT4G39620.1	Thale cress	plastid	61.63	55.06
TraesCS6D01G282900.1	Wheat	plastid	57.06	53.15
TraesCS6A01G303300.1	Wheat	plastid	57.06	53.15
Os02t0750400-01	Rice	cytosol	22.07	52.36
HORVU6Hr1G075250.5	Barley	plastid	50.5	50.8
TraesCS6B01G332800.1	Wheat	plastid	56.66	50.35
KRH02451	Soybean	plastid	21.07	21.72
KRH02371	Soybean	plastid	20.48	21.11
KRH14115	Soybean	plastid	19.48	20.37
KRH46714	Soybean	plastid	20.68	20.19
KRH37687	Soybean	plastid	19.09	19.79
KRH27783	Soybean	cytosol, plastid	16.7	16.09
KRH77730	Soybean	plastid	16.3	15.68
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	19.28	15.52
KRH57931	Soybean	cytosol	3.18	14.95
KRH51622	Soybean	cytosol, plastid	19.68	14.22
KRH60945	Soybean	plastid	18.69	13.78
KRH36131	Soybean	plastid	14.91	13.56
KRG90623	Soybean	nucleus	14.71	13.17
KRH27571	Soybean	plastid	13.12	12.22
KRG91073	Soybean	plastid	17.89	11.34
KRH56998	Soybean	nucleus	18.09	10.61
KRH03384	Soybean	nucleus	17.69	10.36
KRH12254	Soybean	plastid	16.7	10.13
KRH66918	Soybean	cytosol	16.7	10.04
KRH37281	Soybean	plastid	16.3	9.88
KRH01436	Soybean	plastid	15.71	9.03
KRH45156	Soybean	plastid	15.31	8.77
KRG95241	Soybean	plastid	11.53	8.52

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100808981	MapMan:35.1	EMBL:ACUP02003323	EnsemblPlantsGene:GLYMA_05G182700	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0043231	GO:GO:0090305
UniProt:I1K4P1	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH59429	ProteinID:KRH59429	ProteinID:KRH59429.1
ProteinID:KRH59430.1	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF490	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233A554
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:37046146..37049433

Molecular Weight (calculated)

56666.0 Da

IEP (calculated)

9.756

GRAVY (calculated)

-0.427

Length

503 amino acids

Sequence
(BLAST)

001: MSSLSSSPSF ASYGTHPGAA PLSRISCGAR PKRKKSNHNS EAQELVRLLT SKISNDKEPL LKTLNKYVKQ VRTQHCFLLF EELAKHDNWL QCLEVFRWMQ
101: KQRWYIADNG IYSKLISVMG KKGQTRMAMW LFSEMRNTGC RPDTSVYNAL ITAHLHSRDK TKALAKAIGY FQKMKGMERC KPNIVTYNIL LRAFAQARNV
201: EQVNSLFKDL DESIVSPDIY TFNGVMDAYG KNGMIREMEA VLARMKSNQC KPDLITFNLL IDSYGKKQEF GKMEQVFKSL LRSKERASLP TFNSMILNYG
301: KARLKDKAED VFKRMTDMGY TPSFVTHESL IYMYGFCDCV SRAAQLFDEL VESKAHIKVS TLNAMLDVYC INGLPQEADS LFERANSIKI YPDSSTFKLL
401: YKAYTKANQK ELLDKLLKHM DKDGIVPNKR FFLDALGAVA SLPANSESAN AATDSKTANS ESANAATDSN TSNSKSANAA TDSNNPQEFS KLATHVKNIL
501: AHQ

Best Arabidopsis Sequence Match ( AT4G39620.1 )
(BLAST)

001: MDYLLTSPSS LRFSDFISSI PKETDHKWLR FSVNLGDARR STRTRITCGA ISSRRKLAER ESAERENRVL VRSLMSRISD REPLVKTLDK YVKVVRCDHC
101: FLLFEELGKS DKWLQCLEVF RWMQKQRWYI PDNGVYSKLI SVMGKKGQTR MAMWLFSEMK NSGCRPDASV YNALITAHLH TRDKAKALEK VRGYLDKMKG
201: IERCQPNVVT YNILLRAFAQ SGKVDQVNAL FKDLDMSPVS PDVYTFNGVM DAYGKNGMIK EMEAVLTRMR SNECKPDIIT FNVLIDSYGK KQEFEKMEQT
301: FKSLMRSKEK PTLPTFNSMI INYGKARMID KAEWVFKKMN DMNYIPSFIT YECMIMMYGY CGSVSRAREI FEEVGESDRV LKASTLNAML EVYCRNGLYI
401: EADKLFHNAS AFRVHPDAST YKFLYKAYTK ADMKEQVQIL MKKMEKDGIV PNKRFFLEAL EVFGSRLPGS GSENRKSTRS SRSRDSPKGR GGNQLTEFQD
501: KDNKHVFRAV QDCRKNYLEN LSGHDKGSRD ESRKPSQEKQ PLFASDQNNM MIKEKKELFT RVL

Arabidopsis Description

EMB2453Pentatricopeptide repeat-containing protein At4g39620, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SV96]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.