CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45156	Soybean	plastid	94.86	94.53
CDY15384	Canola	cytosol	26.63	54.69
VIT_07s0005g01660.t01	Wine grape	plastid	51.66	52.13
PGSC0003DMT400018827	Potato	cytosol	44.91	51.98
Bra018247.1-P	Field mustard	nucleus	17.71	51.16
CDY19091	Canola	cytosol	41.83	50.21
Os12t0562300-01	Rice	cytosol	17.26	49.35
Solyc06g009520.2.1	Tomato	nucleus, plastid	47.2	49.11
GSMUA_Achr2P02090_001	Banana	cytosol	36.34	48.92
CDY56616	Canola	plastid	43.66	48.42
CDY10802	Canola	plastid	46.29	47.7
Bra019526.1-P	Field mustard	cytosol	14.06	46.59
AT2G31400.1	Thale cress	plastid	47.31	45.1
Bra018246.1-P	Field mustard	plastid	24.69	43.72
TraesCS5A01G085800.1	Wheat	plastid	40.91	41.72
TraesCS5D01G097800.1	Wheat	plastid	40.57	41.47
TraesCS5B01G091600.1	Wheat	plastid	40.46	41.26
Zm00001d030624_P001	Maize	plastid	40.11	40.34
EES16159	Sorghum	plastid	39.89	40.02
Bra021733.1-P	Field mustard	cytosol	43.66	34.79
HORVU5Hr1G022350.1	Barley	plastid	20.23	34.44
KRH03384	Soybean	nucleus	20.34	20.72
KRH56998	Soybean	nucleus	20.23	20.63
KRH51622	Soybean	cytosol, plastid	15.89	19.97
KRH60945	Soybean	plastid	15.43	19.79
KRH57931	Soybean	cytosol	2.4	19.63
KRG91073	Soybean	plastid	17.71	19.52
KRH66918	Soybean	cytosol	17.49	18.28
KRH14115	Soybean	plastid	9.94	18.09
KRH36131	Soybean	plastid	11.43	18.08
KRG90623	Soybean	nucleus	11.54	17.97
KRH12254	Soybean	plastid	16.8	17.73
KRH37281	Soybean	plastid	16.57	17.47
KRH46714	Soybean	plastid	10.17	17.28
KRG95241	Soybean	plastid	12.69	16.3
KRH27571	Soybean	plastid	9.94	16.11
KRH27783	Soybean	cytosol, plastid	9.37	15.71
KRH59429	Soybean	plastid	9.03	15.71
KRH77730	Soybean	plastid	9.26	15.49
KRH37687	Soybean	plastid	8.57	15.46
KRG90712	Soybean	cytosol, endoplasmic reticulum, plastid	10.74	15.04
KRH43291	Soybean	plastid	9.03	15.02
KRH02371	Soybean	plastid	8.23	14.75
KRH02451	Soybean	plastid	8.23	14.75

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100778991	Gene3D:3.30.1370.110	MapMan:35.1	EMBL:ACUP02011514	ncoils:Coil
EnsemblPlantsGene:GLYMA_18G276500	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507
GO:GO:0009536	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	UniProt:I1N4T4	InterPro:IPR002625
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH01436	ProteinID:KRH01436	ProteinID:KRH01436.1	PFAM:PF01535
PFAM:PF13041	PFAM:PF13812	PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF366
InterPro:Pentatricopeptide_repeat	SMART:SM00463	SUPFAM:SSF160443	InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233F3E3	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr18:+:55861770..55865686

Molecular Weight (calculated)

97605.8 Da

IEP (calculated)

8.326

GRAVY (calculated)

-0.282

Length

875 amino acids

Sequence
(BLAST)

001: MASTPTPRPH FSSVPPRPSS NNNQRRYHSQ NRSHHRRNNN QNRWSSSSTR YYSSPASSAG AGIPSAAATA SAAFLSSLSP WLGAQKTRLA PEFSGRPSNR
101: NPGKMNSGGP RAVPNNQQHS KAAEEVLHSL TNAGNDVAAI DNVLLNYRLY VAEDYVYLLK EFANTGDLLL ATRTYNFAMS RATDNTFMGK LTSNMIRTLG
201: RLKKIELALN LFEESRNRGY GNTVYSFSAM ISALGRNDCF SEAVSLLRSM GNFGLEPNLV TYNAIIDAGA KGELPFEIVV KFLEEMIAAG CLPDRLTYNS
301: LLKTCVAKGR WQLCRDLLAE MEWKGIGRDV YTYNTYVDAL CKGGRMDLAR HAIDVEMPAK NILPNVVTYS TLMAGYSKAE RFEDALNIYD EMKHLLIRLD
401: RVSYNTLVGL YANLGWFEEA VGKFKEMECC GIKNDVVTYN ALIEGYGRHN KYVEVRKLFD EMKARRIYPN DLTYSTLIKI YTKGRMYAEA MDVYRELKQE
501: GMKTDVVFYS ALIDALCKNG LIESSLRLLD VMTEKGSRPN VVTYNSIIDA FRIGQQLPAL ECAVDTSFQA NEHQIKPSSS RLSAGNFQDQ KTGNNDEIMK
601: MLEQLAAEKA GLMKKDKRSR QDSFYLVQIF QKMQEMEIKP NVVTFSAILN ACSCCETFQD ASKLLDALCM FDSHVYGVAH GLLMGHGQGL WNQAQTLFDE
701: LEHLDSSTAS AFYNALTDML WHFGQKLGAQ TVVIEGRNRN VWKGGWSTEC LDLHLTSCGA ACAMVHTWLL ELRTTVFGGQ KPPPILSILT GWGKHSKVVG
801: NGTLRKAVEA LLNGIGAPFQ ISECNLGRFK SEGPEVTAWL RQPSTLNVLL LHDCIVYSQP VERNQTFNIP SLGAQ

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.