Factsheet for VIT_07s0005g01660.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400018827	Potato	cytosol	64.82	74.34
CDY15384	Canola	cytosol	35.64	72.54
CDY19091	Canola	cytosol	60.55	72.02
Solyc06g009520.2.1	Tomato	nucleus, plastid	68.74	70.87
Bra018247.1-P	Field mustard	nucleus	23.76	67.99
CDY10802	Canola	plastid	65.63	67.02
CDY56616	Canola	plastid	60.9	66.92
AT2G31400.1	Thale cress	plastid	68.63	64.81
Bra018246.1-P	Field mustard	plastid	36.45	63.97
Bra019526.1-P	Field mustard	cytosol	19.26	63.26
GSMUA_Achr2P02090_001	Banana	cytosol	45.21	60.31
Os12t0562300-01	Rice	cytosol	20.53	58.17
KRH45156	Soybean	plastid	52.71	52.05
KRH01436	Soybean	plastid	52.13	51.66
Bra021733.1-P	Field mustard	cytosol	63.21	49.91
TraesCS5A01G085800.1	Wheat	plastid	48.56	49.07
TraesCS5D01G097800.1	Wheat	plastid	48.33	48.95
TraesCS5B01G091600.1	Wheat	plastid	48.21	48.72
Zm00001d030624_P001	Maize	plastid	48.33	48.16
EES16159	Sorghum	plastid	48.21	47.94
HORVU5Hr1G022350.1	Barley	plastid	24.34	41.05
VIT_03s0091g00440.t01	Wine grape	plastid	21.45	22.93
VIT_17s0000g07500.t01	Wine grape	plastid	22.84	22.78
VIT_07s0031g01360.t01	Wine grape	plastid	12.69	22.49
VIT_11s0052g00600.t01	Wine grape	plastid	20.76	21.92
VIT_13s0064g00400.t01	Wine grape	cytosol	11.76	20.61
VIT_01s0011g01970.t01	Wine grape	cytosol	13.49	20.1
VIT_07s0005g06720.t01	Wine grape	cytosol	9.11	19.95
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	15.92	19.86
VIT_05s0020g00690.t01	Wine grape	plastid	11.3	19.68
VIT_08s0007g08590.t01	Wine grape	cytosol	19.26	19.6
VIT_12s0028g01140.t01	Wine grape	cytosol	12.11	19.16
VIT_16s0039g02560.t01	Wine grape	cytosol	10.61	18.78

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100255579	wikigene:100255579	MapMan:35.1	ProteinID:CCB60024	ProteinID:CCB60024.1
UniProt:F6HZA9	EMBL:FN596502	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006139	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0010019	GO:GO:0016787	GO:GO:0031930	GO:GO:0090305	InterPro:IPR002625	InterPro:IPR002885
InterPro:IPR011990	EntrezGene:LOC100255579	wikigene:LOC100255579	PFAM:PF01535	PFAM:PF13041	PFAM:PF13812
PFscan:PS50828	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF366	InterPro:Pentatricopeptide_repeat	SMART:SM00463
SUPFAM:SSF160443	SUPFAM:SSF48452	InterPro:Smr_dom	InterPro:Smr_dom_sf	TIGR:TC57111	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015CA3D6	ArrayExpress:VIT_07s0005g01660	EnsemblPlantsGene:VIT_07s0005g01660	EnsemblPlants:VIT_07s0005g01660.t01	unigene:Vvi.9681
RefSeq:XP_002271180	RefSeq:XP_002271180.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr7:+:4152515..4157314

Molecular Weight (calculated)

96161.1 Da

IEP (calculated)

8.012

GRAVY (calculated)

-0.221

Length

867 amino acids

Sequence
(BLAST)

001: MASPTPPHCS ITAAKPYQNL HYPQNPTKNH HNNHHWSSHK VSLTNPLPSP RNAAKPGAAS PATATNRNSN FPSLSPLPPS KSELTADFSG RRSTRFVSKM
101: HFGRPKTAAA ARHTSTAEEA LRHAIRFASD DKGIDSVLLN FESRLCGSDD YTFLLRELGN RGEWAKAIRC FEFAVRREQR RNEQGKLASA MISILGRLGQ
201: VELAKNVFET ALNEGYGNTV YAFSALISAY GRSGYCDEAI KVFETMKSSG LKPNLVTYNA VIDACGKGGV DFNRAAEIFD EMLRNGVQPD RITFNSLLAV
301: CGRGGLWEAA RNLFSEMLYR GIEQDIFTYN TLLDAVCKGG QMDLAFQIMS EMPRKHIMPN VVTYSTVIDG YAKAGRLDEA LNLFNEMKFA SIGLDRVSYN
401: TLLSIYAKLG RFEEALNVCK EMESSGIKKD AVTYNALLGG YGKQGKYEEV KRVFEEMKAE RIFPNLLTYS TLIDVYSKGG LYQEAMEVFR EFKKAGLKAD
501: VVLYSALIDA LCKNGLVESA VSFLDEMTKE GIRPNVVTYN SIIDAFGRSG SAECVIDPPY ETNVSKMSSS SLKVVEDATE SEVGDKEDNQ IIKIFGQLAA
601: EKTCHAKKEN RGRQEILCIL AVFHKMHELD IKPNVVTFSA ILNACSRCNS FEDASMLLEE LRLFDNQVYG VAHGLLMGYG DNVWVQAQSL FDEVKQMDSS
701: TASAFYNALT DMLWHFGQRR GAQLVVLEGK RRHVWENMWS NSCLDLHLMS SGAARAMVHA WLLNIRSIVF EGHELPQLLS ILTGWGKHSK VVGDGALRRA
801: IEALLTGMGA PFRVAKCNLG RFISTGAVVA AWLRESGTLK VLVLHDDRTN PDRARCSQIS NLQTLPL

Best Arabidopsis Sequence Match ( AT2G31400.1 )
(BLAST)

001: MASTPPHWVT TTNNHRPWLP QRPRPGRSVT SAPPSSSASV SSAHLSQTTP NFSPLQTPKS DFSGRQSTRF VSPATNNHRQ TRQNPNYNHR PYGASSSPRG
101: SAPPPSSVAT VAPAQLSQPP NFSPLQTPKS DLSSDFSGRR STRFVSKMHF GRQKTTMATR HSSAAEDALQ NAIDFSGDDE MFHSLMLSFE SKLCGSDDCT
201: YIIRELGNRN ECDKAVGFYE FAVKRERRKN EQGKLASAMI STLGRYGKVT IAKRIFETAF AGGYGNTVYA FSALISAYGR SGLHEEAISV FNSMKEYGLR
301: PNLVTYNAVI DACGKGGMEF KQVAKFFDEM QRNGVQPDRI TFNSLLAVCS RGGLWEAARN LFDEMTNRRI EQDVFSYNTL LDAICKGGQM DLAFEILAQM
401: PVKRIMPNVV SYSTVIDGFA KAGRFDEALN LFGEMRYLGI ALDRVSYNTL LSIYTKVGRS EEALDILREM ASVGIKKDVV TYNALLGGYG KQGKYDEVKK
501: VFTEMKREHV LPNLLTYSTL IDGYSKGGLY KEAMEIFREF KSAGLRADVV LYSALIDALC KNGLVGSAVS LIDEMTKEGI SPNVVTYNSI IDAFGRSATM
601: DRSADYSNGG SLPFSSSALS ALTETEGNRV IQLFGQLTTE SNNRTTKDCE EGMQELSCIL EVFRKMHQLE IKPNVVTFSA ILNACSRCNS FEDASMLLEE
701: LRLFDNKVYG VVHGLLMGQR ENVWLQAQSL FDKVNEMDGS TASAFYNALT DMLWHFGQKR GAELVALEGR SRQVWENVWS DSCLDLHLMS SGAARAMVHA
801: WLLNIRSIVY EGHELPKVLS ILTGWGKHSK VVGDGALRRA VEVLLRGMDA PFHLSKCNMG RFTSSGSVVA TWLRESATLK LLILHDHITT ATATTTTMKS
901: TDQQQRKQTS FALQPLLL

Arabidopsis Description

GUN1Pentatricopeptide repeat-containing protein At2g31400, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIC9]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.