Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX86283 | Canola | plastid | 89.76 | 89.76 |
| CDX85360 | Canola | plastid | 88.39 | 88.91 |
| Bra037464.1-P | Field mustard | plastid | 89.76 | 85.23 |
| VIT_07s0005g06720.t01 | Wine grape | cytosol | 59.65 | 76.52 |
| PGSC0003DMT400082022 | Potato | plastid | 64.57 | 67.21 |
| Solyc01g006500.2.1 | Tomato | plastid | 64.37 | 67.01 |
| KRH46714 | Soybean | plastid | 64.96 | 64.08 |
| GSMUA_Achr1P15160_001 | Banana | plastid | 61.61 | 63.75 |
| EER87934 | Sorghum | plastid | 58.46 | 60.37 |
| HORVU7Hr1G027800.8 | Barley | cytosol | 57.28 | 60.0 |
| Zm00001d037476_P001 | Maize | plastid | 57.68 | 59.55 |
| TraesCS7A01G133100.1 | Wheat | plastid | 58.86 | 58.86 |
| TraesCS7B01G033900.1 | Wheat | plastid | 58.66 | 58.78 |
| Os06t0172000-01 | Rice | plastid | 59.06 | 58.71 |
| AT3G53170.2 | Thale cress | plastid | 37.6 | 38.28 |
| AT3G06430.1 | Thale cress | plastid | 33.86 | 35.39 |
| AT4G39620.1 | Thale cress | plastid | 21.26 | 19.18 |
| AT5G36300.2 | Thale cress | cytosol | 12.01 | 18.48 |
| AT3G59040.2 | Thale cress | endoplasmic reticulum | 17.91 | 15.42 |
| AT2G35130.2 | Thale cress | endoplasmic reticulum, golgi | 18.5 | 15.33 |
| AT5G02860.2 | Thale cress | plastid | 22.24 | 13.8 |
| AT2G18940.1 | Thale cress | plastid | 21.65 | 13.38 |
| AT5G42310.1 | Thale cress | plastid | 18.5 | 13.26 |
| AT1G74850.1 | Thale cress | plastid | 19.68 | 11.6 |
| AT2G31400.1 | Thale cress | plastid | 19.49 | 10.78 |
| AT2G41720.1 | Thale cress | cytosol, plastid | 15.75 | 9.73 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:834931 | UniProt:A0A178U9M8 | ProteinID:AED95717.1 | ArrayExpress:AT5G48730 |
| EnsemblPlantsGene:AT5G48730 | RefSeq:AT5G48730 | TAIR:AT5G48730 | RefSeq:AT5G48730-TAIR-G | EnsemblPlants:AT5G48730.1 | TAIR:AT5G48730.1 |
| Unigene:At.49145 | ProteinID:BAB09426.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009451 |
| GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0043231 | GO:GO:0090305 |
| InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_199684.2 | ProteinID:OAO90513.1 | PFAM:PF01535 | PFAM:PF13041 |
| PFAM:PF13812 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF664 | InterPro:Pentatricopeptide_repeat | UniProt:Q9FKC3 | SUPFAM:SSF48452 |
| TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00018E18AE | SEG:seg | : | : |
Description
Pentatricopeptide repeat-containing protein At5g48730, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FKC3]
Coordinates
chr5:+:19763110..19765272
Molecular Weight (calculated)
58294.7 Da
IEP (calculated)
9.492
GRAVY (calculated)
-0.347
Length
508 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSLSTSTSH APPLPTNRRT AERTFTVRCI SISPREPNYA ITSDKSNNTS LSLRETRQSK WLINAEDVNE RDSKEIKEDK NTKIASRKAI SIILRREATK
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF
101: SIIEKKKGSK KLLPRTVLES LHERITALRW ESAIQVFELL REQLWYKPNV GIYVKLIVML GKCKQPEKAH ELFQEMINEG CVVNHEVYTA LVSAYSRSGR
201: FDAAFTLLER MKSSHNCQPD VHTYSILIKS FLQVFAFDKV QDLLSDMRRQ GIRPNTITYN TLIDAYGKAK MFVEMESTLI QMLGEDDCKP DSWTMNSTLR
301: AFGGNGQIEM MENCYEKFQS SGIEPNIRTF NILLDSYGKS GNYKKMSAVM EYMQKYHYSW TIVTYNVVID AFGRAGDLKQ MEYLFRLMQS ERIFPSCVTL
401: CSLVRAYGRA SKADKIGGVL RFIENSDIRL DLVFFNCLVD AYGRMEKFAE MKGVLELMEK KGFKPDKITY RTMVKAYRIS GMTTHVKELH GVVESVGEAQ
501: VVVKKPDF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.