Factsheet for Zm00001d014751_P003

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77078	Sorghum	mitochondrion	79.7	85.83
TraesCS7A01G407400.1	Wheat	cytosol	67.67	78.77
Os06t0710800-01	Rice	cytosol	70.86	76.63
HORVU7Hr1G095190.4	Barley	mitochondrion, plastid	69.17	72.16
TraesCS7B01G307500.2	Wheat	cytosol	68.8	70.52
TraesCS7D01G400900.3	Wheat	cytosol	68.42	70.13
HORVU0Hr1G007320.4	Barley	cytosol	58.83	67.9
GSMUA_Achr1P10690_001	Banana	cytosol	33.83	54.38
VIT_16s0039g02560.t01	Wine grape	cytosol	43.8	47.55
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	32.71	45.67
CDY64953	Canola	cytosol	24.44	44.67
KRH27783	Soybean	cytosol, plastid	42.11	42.91
KRH77730	Soybean	plastid	41.35	42.06
AT5G36300.2	Thale cress	cytosol	25.19	40.61
Bra035352.1-P	Field mustard	mitochondrion	36.47	40.25
CDX74617	Canola	mitochondrion	25.56	38.75
PGSC0003DMT400060882	Potato	mitochondrion	38.35	37.5
Zm00001d021716_P001	Maize	plastid	31.58	25.15
Zm00001d015377_P003	Maize	plastid	19.55	17.42
Zm00001d027349_P001	Maize	plastid	15.04	16.49
Zm00001d037476_P001	Maize	plastid	14.47	15.65
Zm00001d052240_P001	Maize	plastid	14.29	15.23
Zm00001d024248_P001	Maize	plastid	15.23	13.5
Zm00001d036698_P001	Maize	plastid	19.36	13.1
Zm00001d018693_P001	Maize	plastid	13.91	12.96
Zm00001d022003_P001	Maize	plastid	18.8	12.58
Zm00001d022599_P002	Maize	plastid	19.36	11.52
Zm00001d021871_P002	Maize	plastid	16.92	11.18
Zm00001d030624_P001	Maize	plastid	16.73	10.23

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:103626439	MapMan:35.1	UniProt:A0A1D6GW32	ProteinID:AQK67095.1	ProteinID:AQK67099.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:IPR002885	InterPro:IPR011990	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF483	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	TMHMM:TMhelix	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000843A1EB
EnsemblPlantsGene:Zm00001d014751	EnsemblPlants:Zm00001d014751_P003	EnsemblPlants:Zm00001d014751_T003	SEG:seg	:	:

Description

Tetratricopeptide repeat (TPR)-like superfamily protein

Coordinates

chr5:+:61415019..61420504

Molecular Weight (calculated)

59696.7 Da

IEP (calculated)

8.456

GRAVY (calculated)

-0.112

Length

532 amino acids

Sequence
(BLAST)

001: MFFTSPKLIQ ALASHGQSTT ASSISMDACS LVHCHLPRPL QLPLLAPPTP SRHRPRVASA LVCCCCPAAA ADHHQERPWE WYDRAIQSHA GSDLARSLGL
101: LADMQASGGR PSGSAYARLI RALSRAGRAL EAEALLLEMR RLGPRPEAAH YNALLEGLLA AAHLRLADLL LLQMADDGVA RNRRTYTLLL GAYARAGRLE
201: DSWWVLGEMR RWGIRLDTAG YSMLVRLYRD NGMWKKATDL VMEMQEVGVE LDVKIYSGLI DTFGKYGQLA DARRMFDKMR AEGVRPDIST WNALIQWHCR
301: VGNMKRALRF FTSMQEEGMY PDPKIFVMII SRLGEQGKWD EIKKLFDGMN NRGFKESGAV YAILVDIYGQ YGHFRDAQDC IAALRAENTQ LLPRVFCVIA
401: NAYAQQLMEE EGFEPNLVML NSLINAFGTA GRHLEALAVF QHIKDSGMSP DVVTYTTLMK TFMRAKKFEK VSIEFGIIAV VIGPLSMHMI MYWFSSRLKH
501: YACEDLDGYG IKPITLSKAP ECLYVDQKSE KG

Best Arabidopsis Sequence Match ( AT5G36300.2 )
(BLAST)

001: MAPISHTRIS LSMYNSWIRY FCRTGETNEA MSLLAEIHSL GSRPDPLSYV SFIETLASLR RTLEADALFH EVVRFMIYGS YSVRLYNALV SRYLRKEVSW
101: RVVNEMKKRK FRLNSFVYGK IIRIYRDNGM WKKALGIVEE IREIGLPMDV EIYNSVIDTF GKYGELDEEL QVLEKLQRSS DSRPNIRTWN SLIRWHCHHG
201: AVDMALELFT MIFEDIGELV GKLKSQGVAP SANLFCTLAN AYAQQGLCKQ TVKVLKMMEN EGIEPNLIML NVLINAFGTA GKHMEALSIY HHIKETVWIH
301: PDVVTYSTLM KAFTRAKKYE MVCSFYLVTL

Arabidopsis Description

Putative pentatricopeptide repeat-containing protein At5g36300 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFZ2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.