Factsheet for Solyc07g043600.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 7
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400041148	Potato	plastid	95.86	97.2
CDY06027	Canola	plastid	64.31	70.24
VIT_12s0028g01140.t01	Wine grape	cytosol	65.86	69.71
CDX71917	Canola	plastid	64.14	68.26
KRH36131	Soybean	plastid	63.28	66.37
KRG90623	Soybean	nucleus	63.45	65.48
AT3G59040.2	Thale cress	endoplasmic reticulum	64.48	63.39
EES13486	Sorghum	plastid	62.59	60.3
Os08t0191900-01	Rice	plastid	63.1	60.1
Zm00001d024248_P001	Maize	plastid	62.07	60.0
TraesCS3A01G523700.1	Wheat	plastid	62.76	59.87
TraesCSU01G054500.1	Wheat	cytosol, plastid	62.76	59.57
TraesCS3D01G529200.1	Wheat	plastid	62.76	59.57
HORVU3Hr1G114340.4	Barley	mitochondrion	63.1	57.73
CDX98345	Canola	cytosol	27.24	50.8
GSMUA_Achr8P07220_001	Banana	cytosol	65.34	34.83
Solyc01g006500.2.1	Tomato	plastid	18.28	21.72
Solyc08g045780.2.1	Tomato	cytosol	15.86	20.0
Solyc12g098990.1.1	Tomato	plastid	15.17	17.78
Solyc02g068760.2.1	Tomato	cytosol, endoplasmic reticulum, plastid	18.28	17.01
Solyc01g057200.2.1	Tomato	plastid	13.45	16.6
Solyc10g080330.1.1	Tomato	cytosol, endoplasmic reticulum, mitochondrion, nucleus	10.34	15.75
Solyc04g054270.2.1	Tomato	plastid	12.76	15.48
Solyc08g045850.2.1	Tomato	nucleus	17.24	14.31
Solyc01g107320.2.1	Tomato	plastid	19.48	13.8
Solyc07g017760.1.1	Tomato	plastid	17.93	12.35
Solyc04g015950.1.1	Tomato	plastid	17.76	12.12
Solyc03g113630.2.1	Tomato	nucleus	17.59	11.86
Solyc06g009520.2.1	Tomato	nucleus, plastid	16.55	11.41

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.6	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K4CEL7
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF722	InterPro:Pentatricopeptide_repeat
SUPFAM:SSF81901	EnsemblPlantsGene:Solyc07g043600.2	EnsemblPlants:Solyc07g043600.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000276C5DC
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:57548770..57555982

Molecular Weight (calculated)

65944.6 Da

IEP (calculated)

5.000

GRAVY (calculated)

-0.519

Length

580 amino acids

Sequence
(BLAST)

001: MPQTMMIFLK PFISPSSSSL WSKSNSGENS LKTNVKICKR AEVVCQGMLT PRKFMQKRRK VEVFKSAEDE ADQKNWRKMM NEIEEAGSAV SVLRTQRDKN
101: QALPKNLVLG SLVRFKQLKK WNLVSEILEW LRTQHWWDFN EMDFLMLITA YGKQGDFSKA ERILGYMNKK GYPANVISHT ALMEAYGKGG QYAKAEAIFR
201: RMQTSGPEPS AITYQIILKI FVEGDKFNEA QDVFEALMDM DAPPLKPDQK MFHMMIYMYK KAGKYEKARH LFSLMTERGI PQNTVTYNSL MSFETNYKEV
301: ANIYDQMQRA GLQPDVVSYA LLISAYGKAR REEEALAVFE EMLDAGVRPT QKSYNILLDA FAISGMVEQA RTVFKSMRRD RCSPDLCSYT TMLSAYINAS
401: DMEGAEKFFR RIKQDGLEPN VVTYGALIKG YAKTNDLEKM MEKYEEMRVH GIKTNQTIFT TIMDAYGRNK DFGSAVAWFN EMASSGVSPD QKAKNILLSL
501: AKTSEEQMEA KQITGCANEL IVDSISSNIN DNDEDEYDYD DGSGDDDDDD DDDDIDEKES ILSGEKLDQL IISGSAASQT

Best Arabidopsis Sequence Match ( AT3G59040.1 )
(BLAST)

001: MSQAVIFKPF VSVPSSNHSQ RKLQNNIINV GVKIQNRFRV VCMGMLAPRK FLQKRRKMEV FKDAADETDQ KRWRGLMLEI ESTGSAVPVL RQYKTDGDQG
101: LPRDLVLGTL VRFKQLKKWN LVSEILEWLR YQNWWNFSEI DFLMLITAYG KLGNFNGAER VLSVLSKMGS TPNVISYTAL MESYGRGGKC NNAEAIFRRM
201: QSSGPEPSAI TYQIILKTFV EGDKFKEAEE VFETLLDEKK SPLKPDQKMY HMMIYMYKKA GNYEKARKVF SSMVGKGVPQ STVTYNSLMS FETSYKEVSK
301: IYDQMQRSDI QPDVVSYALL IKAYGRARRE EEALSVFEEM LDAGVRPTHK AYNILLDAFA ISGMVEQAKT VFKSMRRDRI FPDLWSYTTM LSAYVNASDM
401: EGAEKFFKRI KVDGFEPNIV TYGTLIKGYA KANDVEKMME VYEKMRLSGI KANQTILTTI MDASGRCKNF GSALGWYKEM ESCGVPPDQK AKNVLLSLAS
501: TQDELEEAKE LTGIRNETAT IIARVYGSDD DEEGVEDISS ESSDDEDEGD DDDDDARETV LYDKPQEGSL GYGSLQTEEL VGL

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J741]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.