Factsheet for GSMUA_Achr2P04910_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_11s0052g00600.t01	Wine grape	plastid	60.14	61.02
KXG20531	Sorghum	plastid	55.7	59.79
Os05t0275000-01	Rice	cytosol, plastid	55.46	58.26
Zm00001d036698_P001	Maize	plastid	54.62	57.89
Solyc07g017760.1.1	Tomato	plastid	58.34	57.72
PGSC0003DMT400010473	Potato	plastid	58.34	57.72
AT2G18940.1	Thale cress	plastid	56.9	57.66
CDY56509	Canola	plastid	56.18	57.21
KRH12254	Soybean	plastid	56.78	57.06
Bra024454.1-P	Field mustard	plastid	55.94	57.04
CDY29249	Canola	plastid	55.82	56.92
KRH37281	Soybean	plastid	55.7	55.9
TraesCS7A01G495500.1	Wheat	plastid	53.54	54.99
TraesCS7B01G401800.2	Wheat	plastid	53.54	54.72
TraesCS7D01G482800.1	Wheat	plastid	53.42	54.67
HORVU7Hr1G111000.5	Barley	plastid	47.3	48.28
GSMUA_Achr6P16830_001	Banana	cytosol	28.45	42.17
GSMUA_Achr1P10690_001	Banana	cytosol	9.48	23.87
GSMUA_Achr9P12090_001	Banana	mitochondrion	19.33	23.4
GSMUA_Achr1P15160_001	Banana	plastid	13.69	23.22
GSMUA_Achr7P03530_001	Banana	cytosol	14.65	20.71
GSMUA_Achr5P22880_001	Banana	plastid	12.36	20.2
GSMUA_Achr1P18290_001	Banana	cytosol	16.09	20.18
GSMUA_Achr11P...	Banana	plastid	13.09	20.07
GSMUA_Achr2P02090_001	Banana	cytosol	15.37	19.69
GSMUA_Achr7P21150_001	Banana	cytosol, plastid	18.25	18.14
GSMUA_Achr11P...	Banana	endoplasmic reticulum	13.93	17.11
GSMUA_Achr8P07220_001	Banana	cytosol	14.29	10.94

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.3	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSMUA_Achr2G04910_001	EnsemblPlants:GSMUA_Achr2P04910_001	EnsemblPlants:GSMUA_Achr2T04910_001	InterPro:IPR002885
InterPro:IPR011990	UniProt:M0S582	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF343	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002949693	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein At2g18940 [Source:GMGC_GENE;Acc:GSMUA_Achr2G04910_001]

Coordinates

chr2:-:10170201..10172702

Molecular Weight (calculated)

92937.3 Da

IEP (calculated)

8.011

GRAVY (calculated)

-0.245

Length

833 amino acids

Sequence
(BLAST)

001: MEGALFSSRP AFPTHTSKTP RKPSTNHPKF NPPPPPPSHS VPLDSLLHHL QHLTQETSTT LHPPQPTNKN PNFPSLRLAS TTIHREKATP ASRPRLAGSE
101: NGVLFLRDPR LGFLSGAGKS LLRSIVEQPL LDLVSLLESK KDEIFGVDWV SLLKALEILG NWEKALALFE WAGSGSNAEG SRLDAPAIEV VIRALGRHSQ
201: HSIASKLFDS IPLEEYCLDI RAYTTLLHAL SRTGKYRKAV ALFKQIKAKG LSPTLVTYNV ILDVYGRMGR SWSKILEILD EMNSRNVGID EFTCSTVISA
301: CGREGLLEEA SMFFEQLKLQ GYVPGTVAYN SLLQVYGKAG KYPAAMGVLK EMEDNNCPAD AVTYNELVAT YARAGFYEEG AAVLDTMASK GIMPNSVTYT
401: TVISGYGKAG KEDEALALFD RMKKLGCVPN TCTYNTILGM LGKKSRTGEM LDILSDMKSN GCVPNRVTWN TMLAMCGKRG MENYVSQVFD EMKKSGVEPD
501: RDTFNTLIAA YGRCGSSTQA LQMYDEMVKA GFSPCTTTYN ALLNAIARKG DWIAAESVIL DMKKKGFKPN ELSYSLLLQT YAKGRHIKGI QAIEEEVYDD
601: KIFPSWVILR TLIIVNFKCR MLNGTEKAFE ELKRNGYKPD LVILNSMLSI YAKNGMYDRA REMFDLIHQF GLRPDLITHN NIMNMYARGG ECWEAEDILK
701: QLEKSGLKPD VVSYNTVING FCKQGLMTEA LRILSDMMAK GVTPCMVTYN TFISGYVSKD MFKEADDVIS YMIQHNCRPD ELTYRIIVDG YCKAKRYEEA
801: MEFVSGILNM DSSFSEQSVN KLTLRVEENK SRH

Best Arabidopsis Sequence Match ( AT2G18940.1 )
(BLAST)

001: MDGALFPHKP PYPIQSKRPP PSQSSNQSIK FSSATLHLPP PSPPSFPLDS LLHHLVHLSS PPPRHSNSAA ARFPSLEVST DSSSSKPILG IEIENERNGS
101: LKLLCKKEVV LVNSIVEQPL TGLSRFFDSV KSELLRTDLV SLVKGLDDSG HWERAVFLFE WLVLSSNSGA LKLDHQVIEI FVRILGRESQ YSVAAKLLDK
201: IPLQEYLLDV RAYTTILHAY SRTGKYEKAI DLFERMKEMG PSPTLVTYNV ILDVFGKMGR SWRKILGVLD EMRSKGLKFD EFTCSTVLSA CAREGLLREA
301: KEFFAELKSC GYEPGTVTYN ALLQVFGKAG VYTEALSVLK EMEENSCPAD SVTYNELVAA YVRAGFSKEA AGVIEMMTKK GVMPNAITYT TVIDAYGKAG
401: KEDEALKLFY SMKEAGCVPN TCTYNAVLSL LGKKSRSNEM IKMLCDMKSN GCSPNRATWN TMLALCGNKG MDKFVNRVFR EMKSCGFEPD RDTFNTLISA
501: YGRCGSEVDA SKMYGEMTRA GFNACVTTYN ALLNALARKG DWRSGENVIS DMKSKGFKPT ETSYSLMLQC YAKGGNYLGI ERIENRIKEG QIFPSWMLLR
601: TLLLANFKCR ALAGSERAFT LFKKHGYKPD MVIFNSMLSI FTRNNMYDQA EGILESIRED GLSPDLVTYN SLMDMYVRRG ECWKAEEILK TLEKSQLKPD
701: LVSYNTVIKG FCRRGLMQEA VRMLSEMTER GIRPCIFTYN TFVSGYTAMG MFAEIEDVIE CMAKNDCRPN ELTFKMVVDG YCRAGKYSEA MDFVSKIKTF
801: DPCFDDQSIQ RLALRVRENL ES

Arabidopsis Description

Pentatricopeptide repeat-containing protein At2g18940, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:O64624]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.