Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 4
- endoplasmic reticulum 4
- vacuole 3
- plasma membrane 3
- golgi 3
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G035060.2 | Barley | cytosol | 97.85 | 72.8 |
| TraesCS2D01G193100.1 | Wheat | plastid | 97.85 | 57.38 |
| TraesCS2B01G212000.1 | Wheat | plastid | 97.63 | 57.11 |
| GSMUA_Achr6P16830_001 | Banana | cytosol | 63.01 | 52.14 |
| KXG36606 | Sorghum | plastid | 84.3 | 50.71 |
| Os07t0590600-00 | Rice | plastid | 84.3 | 50.0 |
| Zm00001d022003_P001 | Maize | plastid | 83.87 | 49.06 |
| CDX71198 | Canola | cytosol | 55.48 | 45.58 |
| KRH27571 | Soybean | plastid | 44.95 | 38.7 |
| VIT_03s0091g00440.t01 | Wine grape | plastid | 62.37 | 35.76 |
| Bra035290.1-P | Field mustard | plastid | 58.71 | 34.12 |
| KRG91073 | Soybean | plastid | 57.85 | 33.88 |
| CDY32056 | Canola | plastid | 58.71 | 33.75 |
| Solyc01g107320.2.1 | Tomato | plastid | 59.35 | 33.7 |
| PGSC0003DMT400066525 | Potato | plastid | 59.57 | 33.66 |
| AT5G02860.2 | Thale cress | plastid | 58.06 | 32.97 |
| TraesCS7A01G495500.1 | Wheat | plastid | 37.63 | 21.58 |
| TraesCS7A01G133100.1 | Wheat | plastid | 22.37 | 20.47 |
| TraesCS7A01G407400.1 | Wheat | cytosol | 18.28 | 18.6 |
| TraesCS5A01G528400.1 | Wheat | plastid | 19.57 | 16.98 |
| TraesCS4A01G178100.5 | Wheat | plastid | 18.92 | 16.27 |
| TraesCS6A01G303300.1 | Wheat | plastid | 17.42 | 15.0 |
| TraesCS3A01G523700.1 | Wheat | plastid | 19.14 | 14.64 |
| TraesCS5A01G085800.1 | Wheat | plastid | 26.45 | 14.34 |
| TraesCS6A01G163600.2 | Wheat | nucleus | 18.71 | 13.79 |
| TraesCS2A01G239500.2 | Wheat | plastid | 25.16 | 13.7 |
| TraesCS5A01G486300.1 | Wheat | plastid | 25.38 | 13.58 |
| TraesCS5A01G486200.1 | Wheat | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G194800.1 | EnsemblPlantsGene:TraesCS2A01G194800 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF308 |
| PFAM:PF01535 | PFAM:PF13041 | PFAM:PF13812 | PFscan:PS51375 | SEG:seg | TIGRFAMs:TIGR00756 |
| MapMan:16.12.4.3 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2A:+:164266909..164268753
Molecular Weight (calculated)
51854.9 Da
IEP (calculated)
6.199
GRAVY (calculated)
-0.107
Length
465 amino acids
Sequence
(BLAST)
(BLAST)
001: MVANGIQPAI VTYNVVLHVY FKIAVPWKDV LALVDSMKND GIPLDRYTYN TLISCCRRGA LYKEAAKVFD EMRAAGFEPD KVTFNSLLDV YGKARMHDEA
101: IGVLKEMELG GCPPSVVTYN SLISSYVKDG LLKEAAELKE EMELKGIQPD VITYTTLISG LDRAGKIDAA IGTCDEMLRN GCKPNLCTYN ALIKLHGVRG
201: KFPEMMVVFD DLRSAGFVPD VVTWNTLLAV FGQNGLDSEV SGVFKEMKKS GYVPERDTYV SLISSYSRCG LFDQSMEIYK RMIEAGIYPD ISTYNAVLSA
301: LARGGCWEQA EKLFAEMENL DCRPDELSYS SLLHAYANAK KLDKMKALSE DIYAEKIESH HGLVKTLVLV NSKVNNLSET EKAFLELRKR RCSLDINVLN
401: AMISVYGKNR MVKKVEEILS LMKGSCINLS TATYNSLMHM YSRLGDCEKC ENILTEIKSS GARPD
101: IGVLKEMELG GCPPSVVTYN SLISSYVKDG LLKEAAELKE EMELKGIQPD VITYTTLISG LDRAGKIDAA IGTCDEMLRN GCKPNLCTYN ALIKLHGVRG
201: KFPEMMVVFD DLRSAGFVPD VVTWNTLLAV FGQNGLDSEV SGVFKEMKKS GYVPERDTYV SLISSYSRCG LFDQSMEIYK RMIEAGIYPD ISTYNAVLSA
301: LARGGCWEQA EKLFAEMENL DCRPDELSYS SLLHAYANAK KLDKMKALSE DIYAEKIESH HGLVKTLVLV NSKVNNLSET EKAFLELRKR RCSLDINVLN
401: AMISVYGKNR MVKKVEEILS LMKGSCINLS TATYNSLMHM YSRLGDCEKC ENILTEIKSS GARPD
001: MADKLALPLL LPCTPSSKPY SHDQNHHISR TPFLTTSLSS PPPPPVEPLL HDVFLHQNPN SRQPISSQTS RNRNRTRIGK SRDPNLGKPW SYHGLSPQGQ
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP
101: QVLRSLIEPN FDSGQLDSVL SELFEPFKDK PESTSSELLA FLKGLGFHKK FDLALRAFDW FMKQKDYQSM LDNSVVAIII SMLGKEGRVS SAANMFNGLQ
201: EDGFSLDVYS YTSLISAFAN SGRYREAVNV FKKMEEDGCK PTLITYNVIL NVFGKMGTPW NKITSLVEKM KSDGIAPDAY TYNTLITCCK RGSLHQEAAQ
301: VFEEMKAAGF SYDKVTYNAL LDVYGKSHRP KEAMKVLNEM VLNGFSPSIV TYNSLISAYA RDGMLDEAME LKNQMAEKGT KPDVFTYTTL LSGFERAGKV
401: ESAMSIFEEM RNAGCKPNIC TFNAFIKMYG NRGKFTEMMK IFDEINVCGL SPDIVTWNTL LAVFGQNGMD SEVSGVFKEM KRAGFVPERE TFNTLISAYS
501: RCGSFEQAMT VYRRMLDAGV TPDLSTYNTV LAALARGGMW EQSEKVLAEM EDGRCKPNEL TYCSLLHAYA NGKEIGLMHS LAEEVYSGVI EPRAVLLKTL
601: VLVCSKCDLL PEAERAFSEL KERGFSPDIT TLNSMVSIYG RRQMVAKANG VLDYMKERGF TPSMATYNSL MYMHSRSADF GKSEEILREI LAKGIKPDII
701: SYNTVIYAYC RNTRMRDASR IFSEMRNSGI VPDVITYNTF IGSYAADSMF EEAIGVVRYM IKHGCRPNQN TYNSIVDGYC KLNRKDEAKL FVEDLRNLDP
801: HAPKGEDLRL LERIVKKWP
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g02860 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYZ9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.