Factsheet for TraesCS2B01G238300.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU2Hr1G043170.1	Barley	mitochondrion	97.16	98.34
EER99505	Sorghum	plastid	91.93	92.07
Zm00001d021716_P001	Maize	plastid	91.63	91.77
Os07t0548300-01	Rice	plastid	81.32	84.34
GSMUA_Achr9P12090_001	Banana	mitochondrion	64.42	62.65
VIT_18s0122g01380.t01	Wine grape	cytosol, mitochondrion, plastid	55.31	53.24
KRH51622	Soybean	cytosol, plastid	54.26	52.16
CDY31603	Canola	plastid	51.57	52.04
AT5G42310.1	Thale cress	plastid	54.56	51.48
PGSC0003DMT400030453	Potato	mitochondrion	53.36	51.22
CDX71562	Canola	mitochondrion, plastid	53.06	50.79
Solyc08g045850.2.1	Tomato	nucleus	53.06	50.79
Bra017881.1-P	Field mustard	plastid	52.91	50.57
KRH60945	Soybean	plastid	51.27	50.29
TraesCS7B01G307500.2	Wheat	cytosol	27.06	34.87
TraesCS7B01G401800.2	Wheat	plastid	25.56	20.98
TraesCS2B01G212000.1	Wheat	plastid	22.87	19.25
TraesCS4B01G359900.1	Wheat	plastid	14.2	18.89
TraesCS7B01G033900.1	Wheat	plastid	14.05	18.54
TraesCS4B01G138200.1	Wheat	cytosol, mitochondrion, plastid	13.3	16.89
TraesCS6B01G332800.1	Wheat	plastid	13.0	15.37
TraesCS5B01G500100.1	Wheat	plastid	20.03	15.24
TraesCS2B01G269700.1	Wheat	plastid	18.09	14.83
TraesCS6B01G186300.2	Wheat	cytosol, mitochondrion	13.75	14.67
TraesCS5B01G091600.1	Wheat	plastid	18.54	14.45

Protein Annotations

Gene3D:1.25.40.10	MapMan:16.12.4.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003727
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536	GO:GO:0009570
GO:GO:0009579	GO:GO:0009658	GO:GO:0009987	GO:GO:0010239	GO:GO:0016020	GO:GO:0016043
GO:GO:0042644	GO:GO:0042651	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535	PFAM:PF13041
PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF788	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	EnsemblPlantsGene:TraesCS2B01G238300	EnsemblPlants:TraesCS2B01G238300.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr2B:+:239642914..239646276

Molecular Weight (calculated)

73837.4 Da

IEP (calculated)

7.014

GRAVY (calculated)

-0.000

Length

669 amino acids

Sequence
(BLAST)

001: MPASLLPPTF LPHHRQRQRL RLPVPSCTTS SVSVSVSASR YDFEPLLAYL SDPSTVASLT SPSPPPIVPA PERRLAASYS AVPSHEWHAL LRGLAASDAS
101: LPLAFALLPF LQRHRLCFPL DLLLSSFIHS LSVSGRLLPH SLLLSFPPSL SDPPSPLLLN SLLAASAAAS RPAIALRLLA LIREHNFLPD LASYSHLLAS
201: LLNTRDPPDA AILERLLGDL RESRLEPDAP LFSDLISAFA RAALPDAALE LLASAQAIGL TPRSNAVTAL ISALGIAGRV PEAEALFLEF FLAGEIKPRT
301: RAYNALLKGY VKIGSLKNAE HVLDEMSECG VAPDEATYSL LVDAYTRAGR WESARILLKE MEADGVKPSS YVFSRILAGF RDRGDWQKAF AVLREMHASG
401: VQPDRHFYNV MIDTFGKYNC LGHAMDVFNR MREEGIEPDV VTWNTLIDAH CKGGRHDRAM ELFKEMRESN CPPGTTTYNI MINLLGEQER WVGVETMMSE
501: MKEQGLVPNI ITYTTLVDVY GRSGRYKEAI DCIEAMKADG LKPSPTMYHA LVNAYAQRGL ADHALNVVKA MRADGLEAST VVLNSLINAF GEDRRVVEAF
601: SVLQFMKEND FKPDVITYTT LMKALIRVEQ FDKVPVIYEE MITSGCAPDR KARAMLRSAL RYMKHTRVA

Best Arabidopsis Sequence Match ( AT5G42310.1 )
(BLAST)

001: MLLLQQPPLV STRFHSLYFL THHHHHHHRF FQPPISAFSA TTSASLPSPS PSSSSSYFSS WNGLDTNEEE DNEFSSEVHR RYDFSPLLKF LSRFGPVELA
101: LDSESESEAS PESLNPVEFD LVESYRAVPA PYWHSLIKSL TSSTSSLGLA YAVVSWLQKH NLCFSYELLY SILIHALGRS EKLYEAFLLS QKQTLTPLTY
201: NALIGACARN NDIEKALNLI AKMRQDGYQS DFVNYSLVIQ SLTRSNKIDS VMLLRLYKEI ERDKLELDVQ LVNDIIMGFA KSGDPSKALQ LLGMAQATGL
301: SAKTATLVSI ISALADSGRT LEAEALFEEL RQSGIKPRTR AYNALLKGYV KTGPLKDAES MVSEMEKRGV SPDEHTYSLL IDAYVNAGRW ESARIVLKEM
401: EAGDVQPNSF VFSRLLAGFR DRGEWQKTFQ VLKEMKSIGV KPDRQFYNVV IDTFGKFNCL DHAMTTFDRM LSEGIEPDRV TWNTLIDCHC KHGRHIVAEE
501: MFEAMERRGC LPCATTYNIM INSYGDQERW DDMKRLLGKM KSQGILPNVV THTTLVDVYG KSGRFNDAIE CLEEMKSVGL KPSSTMYNAL INAYAQRGLS
601: EQAVNAFRVM TSDGLKPSLL ALNSLINAFG EDRRDAEAFA VLQYMKENGV KPDVVTYTTL MKALIRVDKF QKVPVVYEEM IMSGCKPDRK ARSMLRSALR
701: YMKQTLRAS

Arabidopsis Description

CRP1Pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8L844]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.