Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G425300.2 | Wheat | nucleus | 78.69 | 78.06 |
| TraesCS5A01G423300.2 | Wheat | nucleus | 78.95 | 78.01 |
| HORVU5Hr1G103280.3 | Barley | cytosol | 52.28 | 70.52 |
| KRH13511 | Soybean | nucleus | 30.43 | 55.5 |
| Zm00001d016836_P002 | Maize | nucleus | 54.42 | 53.49 |
| Os02t0557500-01 | Rice | cytosol, nucleus | 28.82 | 52.31 |
| OQU85120 | Sorghum | nucleus, plastid | 49.06 | 47.72 |
| KRH43656 | Soybean | nucleus | 33.78 | 42.07 |
| Bra018446.1-P | Field mustard | nucleus | 37.8 | 37.75 |
| CDY20942 | Canola | nucleus | 37.0 | 36.6 |
| PGSC0003DMT400053361 | Potato | nucleus | 37.13 | 36.4 |
| GSMUA_Achr6P12770_001 | Banana | nucleus | 40.21 | 35.97 |
| Solyc01g103090.2.1 | Tomato | nucleus | 36.33 | 34.52 |
| AT1G10320.1 | Thale cress | nucleus | 34.85 | 34.35 |
| VIT_12s0035g01790.t01 | Wine grape | nucleus | 36.6 | 30.88 |
| TraesCS3D01G244700.1 | Wheat | nucleus | 10.99 | 29.39 |
| TraesCS5D01G275300.1 | Wheat | nucleus | 11.66 | 27.88 |
| TraesCS1D01G405300.3 | Wheat | nucleus | 10.32 | 26.28 |
| TraesCS5D01G432000.1 | Wheat | cytosol | 2.82 | 10.88 |
Protein Annotations
| MapMan:16.4.4.3 | Gene3D:3.30.70.330 | ncoils:Coil | GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0046872 | GO:GO:0089701 |
| InterPro:IPR000504 | InterPro:IPR000571 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00642 | PRINTS:PR01848 |
| PFscan:PS50102 | PFscan:PS50103 | PANTHER:PTHR12620 | PANTHER:PTHR12620:SF4 | InterPro:RBD_domain_sf | InterPro:RRM_dom |
| InterPro:RRM_dom_euk | SMART:SM00356 | SMART:SM00361 | SUPFAM:SSF54928 | EnsemblPlantsGene:TraesCS5D01G431900 | EnsemblPlants:TraesCS5D01G431900.1 |
| InterPro:U2AF_small | InterPro:Znf_CCCH | TIGR:cd12540 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr5D:+:488348222..488354546
Molecular Weight (calculated)
84554.3 Da
IEP (calculated)
7.561
GRAVY (calculated)
-1.261
Length
746 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTAAGDLPA ASTRSERRKE RKKERRRRAR REAAAAARAA AEALAADPEE GRRLRELEEA EAAASDRARR AFEDAERRWL EKAAERAAEE AAAAAAEEEA
101: RAAEASTRDK YNDDHRDETE DDGEWEYVED GPAEIIWQGN EIIVKKKKIK IPKKTEDKPL SQEEERPTSN PLPPQSVAVA SQRREPSLSA RELLEKVAQE
201: TPNFGTEQDK AHCPFYLKTA ACRFGVRCSR VHFYPDKSCT LLMKNMYNGP GLVLEQDEGL EFTDEEIEQS YEEFYEDVHT EFLKFGELVN FKVCRNGSFH
301: LRGNVYVHYK ALDSALLAYN SMNGRYFAGK QITCEFVALT KWKSAICGEY MRSRFKTCSH GVACNFIHCF RNPGGDYEWA DWDNPPPKYW TRKMAALFGP
401: SDDAIFDKAS DTPDFERLHS SDRKRLRSSD DRYISSRHGD GGAHKRHSSR VFSHSKQEQS NHIMKHGHTR HRREASAANE QRGQEIEDDT GRYCSPMENE
501: RVSQAHKHEE KHRDGHGDGA RGYNGKTKSR KHRSERRESL ESGCSDWPSE FADAGTSRSP SGSKSTNRQS SDDPNLERGY STADKSSGKA HIAKSSSRHY
601: VEDDSYGEKV SGRGKSGKHS DRCDDPDDRW LATNSDVDSD AEAQFLRSSS GVGKGGRNDN APPDEDDHYQ RSSSRSARSR AKDDKSSRKR KKHHSEIRKN
701: SDSDDGPSDS SNIRDLSSHA WRSRSRSSEE DLSLHRRRKG RRGHDS
101: RAAEASTRDK YNDDHRDETE DDGEWEYVED GPAEIIWQGN EIIVKKKKIK IPKKTEDKPL SQEEERPTSN PLPPQSVAVA SQRREPSLSA RELLEKVAQE
201: TPNFGTEQDK AHCPFYLKTA ACRFGVRCSR VHFYPDKSCT LLMKNMYNGP GLVLEQDEGL EFTDEEIEQS YEEFYEDVHT EFLKFGELVN FKVCRNGSFH
301: LRGNVYVHYK ALDSALLAYN SMNGRYFAGK QITCEFVALT KWKSAICGEY MRSRFKTCSH GVACNFIHCF RNPGGDYEWA DWDNPPPKYW TRKMAALFGP
401: SDDAIFDKAS DTPDFERLHS SDRKRLRSSD DRYISSRHGD GGAHKRHSSR VFSHSKQEQS NHIMKHGHTR HRREASAANE QRGQEIEDDT GRYCSPMENE
501: RVSQAHKHEE KHRDGHGDGA RGYNGKTKSR KHRSERRESL ESGCSDWPSE FADAGTSRSP SGSKSTNRQS SDDPNLERGY STADKSSGKA HIAKSSSRHY
601: VEDDSYGEKV SGRGKSGKHS DRCDDPDDRW LATNSDVDSD AEAQFLRSSS GVGKGGRNDN APPDEDDHYQ RSSSRSARSR AKDDKSSRKR KKHHSEIRKN
701: SDSDDGPSDS SNIRDLSSHA WRSRSRSSEE DLSLHRRRKG RRGHDS
001: MEQANEKEEE ERHEEAAGEK ESFEESKEKA AEMSRKEKRK AMKKLKRKQV RKEIAAKERE EAKAKLNDPA EQERLKAIEE EDARRREKEL KDFEESERAW
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
101: REAMEIKRKK EEEEEAKREE EERRWKDLEE LRKLEASGND ECGEDEDGEY EYIEEGPPEI IFQGNEIILK KNKVRVPKKS VVQVDGHEIS DRPTSNPLPP
201: GSEASANYQN VSSAQQILES VAQEVPNFGT EQDKAHCPFH LKTGACRFGQ RCSRVHFYPN KSCTLLMKNM YNGPGITWEQ DEGLEYTDEE AELCYEEFYE
301: DVHTEFLKYG ELVNFKVCRN GSFHLKGNVY VHYRSLESAI LAYQSINGRY FAGKQVNCEF VNISRWKVAI CGEYMKSRLK TCSRGSACNF IHCFRNPGGD
401: YEWADHDRPP PRFWIHKMTS LFGYSDEKHM EHESSGSLND SISDLSTDSH RQPSRRSRSR DHDHANVGST PSYRSRKYHG DTQDSTREDK LRRHAENCHD
501: GDDSPSRDGS LEREMYKERR YAKDTLHRDS RWSEHSPGHR VGRKRIHGRY SDDDSADGDD YGRRGTGHKR KPRRGTDSGV QEQMDNEKDR KTHRSSRKHS
601: REGSSADKEE GHEHDRVHTV SDKSHRERSK HRHERSSSRY SHEEDSTESR HHQHKESDKK RSVETSPVGY QSDKDRDRSK QRQRYKSDDP ESDQSRKGKR
701: QSEENSDRET HKERRHRHRK RRRTQNSDDQ NPKESEEVEE EIERWRPV
Arabidopsis Description
Zinc finger CCCH domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY74]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.