CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21243	Canola	cytosol	41.07	47.92
AT3G44785.1	Thale cress	cytosol, nucleus, plastid	50.0	37.33
CDY46291	Canola	nucleus	69.64	27.86
HORVU5Hr1G073660.1	Barley	cytosol	58.93	17.46
CDY60278	Canola	nucleus	62.5	14.4
CDY03934	Canola	nucleus	62.5	14.34
CDX90100	Canola	nucleus	71.43	13.99
CDY11775	Canola	nucleus	71.43	13.79
CDX95151	Canola	nucleus	64.29	12.81
CDY52374	Canola	nucleus	64.29	12.59
CDX93437	Canola	nucleus	23.21	2.98
CDY20942	Canola	nucleus	30.36	2.25
CDY21244	Canola	nucleus	5.36	1.83

Protein Annotations

MapMan:35.2	GO:A0A078CHC1	EnsemblPlants:CDX74383	ProteinID:CDX74383	ProteinID:CDX74383.1	GO:GO:0000398
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0046872	GO:GO:0089701	EnsemblPlantsGene:GSBRNA2T00112202001	InterPro:IPR000571	PFAM:PF00642	PFscan:PS50103
PANTHER:PTHR12620	PANTHER:PTHR12620:SF13	SMART:SM00356	SUPFAM:SSF90229	InterPro:U2AF_small	UniParc:UPI0004EEC57E
InterPro:Znf_CCCH	InterPro:Znf_CCCH_sf	SEG:seg	:	:	:

Description

BnaA03g26640D

Coordinates

chrLK031800:-:2575875..2576473

Molecular Weight (calculated)

5951.0 Da

IEP (calculated)

8.513

GRAVY (calculated)

-0.666

Length

56 amino acids

Sequence
(BLAST)

1: MAEHLASIYG SENDRVNCPF YNKMGGCRHG DRCSRIHNRG NSLGGGRTEG GVGVGV

Best Arabidopsis Sequence Match ( AT1G27650.1 )
(BLAST)

001: MAEHLASIFG TEKDRVNCPF YFKIGACRHG DRCSRLHNRP TISPTLLLSN MYQRPDMITP GVDAQGQPLD PRKIQEHFED FFEDLFEELG KFGEIESLNI
101: CDNLADHMIG NVYVQFKEED QAAAALQALQ GRFYSGRPII ADFSPVTDFR EATCRQYEEN NCNRGGYCNF MHVKLVSREL RRKLFGRYRR SYRRGSRSRS
201: RSRSISPRNK RDNDRRDPSH REFSHRDRDR EFYRHGSGKR SSERSERQER DGSRGRRQAS PKRGGSPGGG REGSEERRAR IEQWNREREE KEEGGA

Arabidopsis Description

U2AF35ASplicing factor U2af small subunit A [Source:UniProtKB/Swiss-Prot;Acc:Q9S709]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.