Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G149700.1 | Wheat | mitochondrion | 85.47 | 92.94 |
| TraesCS6B01G188700.1 | Wheat | mitochondrion | 83.77 | 90.48 |
| HORVU6Hr1G032550.1 | Barley | plastid | 86.24 | 88.71 |
| EES04708 | Sorghum | mitochondrion, plastid | 59.51 | 63.32 |
| GSMUA_Achr1P09410_001 | Banana | mitochondrion | 38.79 | 40.95 |
| KRH01461 | Soybean | nucleus | 32.92 | 33.86 |
| VIT_14s0083g00610.t01 | Wine grape | mitochondrion | 33.54 | 33.38 |
| KRH45172 | Soybean | mitochondrion | 31.38 | 32.32 |
| CDX69485 | Canola | mitochondrion | 30.6 | 30.6 |
| Bra008660.1-P | Field mustard | mitochondrion | 30.6 | 30.46 |
| PGSC0003DMT400026059 | Potato | mitochondrion | 30.29 | 30.11 |
| Bra001047.1-P | Field mustard | mitochondrion | 29.37 | 29.14 |
| CDY26480 | Canola | mitochondrion | 29.52 | 29.03 |
| CDX74255 | Canola | mitochondrion | 29.21 | 28.99 |
| CDX91994 | Canola | mitochondrion | 29.06 | 28.83 |
| AT5G15980.1 | Thale cress | mitochondrion | 28.75 | 27.84 |
| AT3G02490.1 | Thale cress | mitochondrion | 28.44 | 27.67 |
| Solyc02g089560.2.1 | Tomato | mitochondrion | 6.34 | 18.81 |
| TraesCS3A01G525400.1 | Wheat | mitochondrion | 15.3 | 16.89 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G162500.1 | EnsemblPlantsGene:TraesCS6A01G162500 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF986 |
| PFAM:PF01535 | PFscan:PS51375 | SEG:seg | TIGRFAMs:TIGR00756 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6A:+:157958816..157960759
Molecular Weight (calculated)
71545.6 Da
IEP (calculated)
9.427
GRAVY (calculated)
-0.129
Length
647 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKTKFSAKP IELLLHHSKC PNSNRANPSR LNPHFQFQRS SSCAAAATTT TTMLRTVLNS GGGRLCRLPS LLPHHRLMSG SSVAAIFFQP SLPADPATAI
101: QSAGIDLSHP NTIPALLVHP DLASNYPAAS RFFSWAASHD AAVLNSKCFN SMLQLAAANS DAAHFWSLVS SMRSRGYGIS KTTLQAATES FRSNGMSKDA
201: DMIQKAFSAH SRNAAVAEAC KILRSDADEL SKLDKLNQLG VEVSDEMVAL VVEKIGQFPR QAMVFFNWVE QSAGAGINWG KVYNAMAKII GREDSIEEFR
301: EVLRKMSSKE VGLDKEVYVI LIDRFLKRKM FEDAVDLFRF AMGGTEKPSA QDFVFLLKKL VVRDDMDLKL VMRVVRIYQK AGNEVKSSVF DAVIKSLRSV
401: ERLGESGRVL KAMEHGGFAP DSTVHGKAVL AMCDAGNLET AHKHLARVEK SGHKLDPPVW SALVQKYSLG DDVDMAVSCF PEMLERRSGN QVGSALEVLV
501: YGLCRKKEAK EAFKVLKDLV LEKDVVPWQS TYKYLIHKLI RQGHLKEAFD VLGLMKSNGF PPYINPFITH ILKSGTVDDA LGLLNAMSSE EFPSRTVYMR
601: LFQGLFKEGR HEIARQLLSV SPGSVQNHAD VLDLFYKMKI EEPTAAL
101: QSAGIDLSHP NTIPALLVHP DLASNYPAAS RFFSWAASHD AAVLNSKCFN SMLQLAAANS DAAHFWSLVS SMRSRGYGIS KTTLQAATES FRSNGMSKDA
201: DMIQKAFSAH SRNAAVAEAC KILRSDADEL SKLDKLNQLG VEVSDEMVAL VVEKIGQFPR QAMVFFNWVE QSAGAGINWG KVYNAMAKII GREDSIEEFR
301: EVLRKMSSKE VGLDKEVYVI LIDRFLKRKM FEDAVDLFRF AMGGTEKPSA QDFVFLLKKL VVRDDMDLKL VMRVVRIYQK AGNEVKSSVF DAVIKSLRSV
401: ERLGESGRVL KAMEHGGFAP DSTVHGKAVL AMCDAGNLET AHKHLARVEK SGHKLDPPVW SALVQKYSLG DDVDMAVSCF PEMLERRSGN QVGSALEVLV
501: YGLCRKKEAK EAFKVLKDLV LEKDVVPWQS TYKYLIHKLI RQGHLKEAFD VLGLMKSNGF PPYINPFITH ILKSGTVDDA LGLLNAMSSE EFPSRTVYMR
601: LFQGLFKEGR HEIARQLLSV SPGSVQNHAD VLDLFYKMKI EEPTAAL
001: MRYQWRSLLF RSYRSSPRPF LSHHSRFQVI SNSTRSFSSF LHERFGVQQR QCLFALRSPL ASSVSRRFSS ESAIEEKLPA ETVVIDVFSR LNGKDEITKE
101: LDSNDVVISH ELALRVLREL ESSPDVAGRF FKWGLEAYPQ KLSSKSYNTM LRIFGVNGLV DEFWRLVDDM KKKGHGVSAN VRDRVGDKFK KDGLENDLER
201: LKELFASGSM DNSVDKVCNR VCKIVMKEVW GADVEKQLRD LKLEFKSDVV KMVLEKLDVD PRKALLFFRW IDESGSFKHD EKTYNAMARV LGKEKFLDRF
301: QHMIEEIRSA GYEMEMETYV RVSARFCQTK MIKEAVELFE FAMAGSISNT PTPHCCSLLL KKIVTAKKLD MDLFTRTLKA YTGNGNVVPD VMLQHVLKSL
401: RSVDRFGQSN EVLKAMNEGG YVPSGDLQSV IASGLSRKGK KDEANELVNF MEASGNHLDD KAMASLVEGH CDAKDLEEAS ECFKKMIGKE GVSYAGYAFE
501: KLVLAYCNSF QARDVYKLFS ELVKQNQLKP WHSTYKIMVR NLLMKKVARD GGFEEALSLL PMMRNHGFPP FVDPFMDYLS NSGTSAEAFA FLKAVTSKKF
601: PSNSMVLRVF EAMLKSARHS EAQDLLSMSP SYIRRNAEVL ELFNTMKPEK CSLEKPLPAP AQIEA
101: LDSNDVVISH ELALRVLREL ESSPDVAGRF FKWGLEAYPQ KLSSKSYNTM LRIFGVNGLV DEFWRLVDDM KKKGHGVSAN VRDRVGDKFK KDGLENDLER
201: LKELFASGSM DNSVDKVCNR VCKIVMKEVW GADVEKQLRD LKLEFKSDVV KMVLEKLDVD PRKALLFFRW IDESGSFKHD EKTYNAMARV LGKEKFLDRF
301: QHMIEEIRSA GYEMEMETYV RVSARFCQTK MIKEAVELFE FAMAGSISNT PTPHCCSLLL KKIVTAKKLD MDLFTRTLKA YTGNGNVVPD VMLQHVLKSL
401: RSVDRFGQSN EVLKAMNEGG YVPSGDLQSV IASGLSRKGK KDEANELVNF MEASGNHLDD KAMASLVEGH CDAKDLEEAS ECFKKMIGKE GVSYAGYAFE
501: KLVLAYCNSF QARDVYKLFS ELVKQNQLKP WHSTYKIMVR NLLMKKVARD GGFEEALSLL PMMRNHGFPP FVDPFMDYLS NSGTSAEAFA FLKAVTSKKF
601: PSNSMVLRVF EAMLKSARHS EAQDLLSMSP SYIRRNAEVL ELFNTMKPEK CSLEKPLPAP AQIEA
Arabidopsis Description
Pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M891]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.