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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 4
  • mitochondrion 6
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plasma membrane, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plasma membrane, plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:mitochondrion
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400026059 Potato mitochondrion 85.32 28.57
VIT_14s0083g00610.t01 Wine grape mitochondrion 38.99 13.08
KRH01461 Soybean nucleus 37.61 13.04
KRH45172 Soybean mitochondrion 36.24 12.58
CDX74255 Canola mitochondrion 31.19 10.43
AT5G15980.1 Thale cress mitochondrion 31.65 10.33
Bra008660.1-P Field mustard mitochondrion 30.73 10.31
CDX91994 Canola mitochondrion 30.73 10.28
Bra001047.1-P Field mustard mitochondrion 30.73 10.28
AT3G02490.1 Thale cress mitochondrion 31.19 10.23
CDX69485 Canola mitochondrion 29.82 10.05
CDY26480 Canola mitochondrion 29.36 9.73
GSMUA_Achr1P09410_001 Banana mitochondrion 22.94 8.16
HORVU6Hr1G032550.1 Barley plastid 20.64 7.15
TraesCS6A01G162500.1 Wheat plastid 18.81 6.34
EES04708 Sorghum mitochondrion, plastid 17.43 6.25
TraesCS6D01G149700.1 Wheat mitochondrion 16.97 6.22
TraesCS6B01G188700.1 Wheat mitochondrion 16.97 6.18
Solyc03g112190.2.1 Tomato mitochondrion 19.72 5.81
Protein Annotations
EnsemblPlants:Solyc02g089560.2.1EnsemblPlantsGene:Solyc02g089560.2Gene3D:1.25.40.10GO:GO:0003674GO:GO:0005488GO:GO:0005515
InterPro:IPR011990InterPro:TPR-like_helical_dom_sfPANTHER:PTHR24015PANTHER:PTHR24015:SF350SEG:segUniParc:UPI0002768C53
UniProt:K4BCA7MapMan:35.1::::
Description
No Description!
Coordinates
chr2:-:51344886..51348072
Molecular Weight (calculated)
24920.6 Da
IEP (calculated)
9.818
GRAVY (calculated)
-0.458
Length
218 amino acids
Sequence
(BLAST)
001: MRNQQQWLLL LLRHHSLAQP HISRHLINQS PFQVNRSISS IASSTIHSRA SHMLPYQSLT VHSFSTSELA VEHKVSDQIA VLTGIFSKPN RSNEEIKIDL
101: ESNNVTVTHD LVIRALRSFN TAPDAARKFF NWVKENESER LSSKVYNYML GILGSNGFVK EFWSMVEIMK SKGYGVSRGT FNRAIERFEK EKLSGDVEKL
201: KKLYGSELAG NSSEEEWH
Best Arabidopsis Sequence Match ( AT5G15980.1 )
(BLAST)
001: MRYQQWRLML LRSYHRSHLP YLSPCSQVTS ISSRSFSSFI HPGIGALQQS EQLCPLRSPM TSSGNLVKSV GRSFSSEPAV EEKSSAEATV IDIFSRLSGE
101: DEIRKELESS GVVISQDLAL KVLRKLESNP DVAKSFFQWI KEASPEELSS KNYNMMLRIL GGNGLVDEFW GLVDVMKKKG HGLSANVRDK VGDKFQKDGL
201: ESDLLRLRKL FTSDCLDNSA ENVCDRVCKI VMKEEWGDDV EKRVRDLNVE FKSDLVKMIV ERLDVEPRKA LLFFRWIDES DLFKHDEKTY NAMARVLGKE
301: KFLDRFQNIV VEMRSAGYEV EIETYVRVST RFCQTKLIKE AVDLFEIAMA GSSSSNNPTP HCFCLLLKKI VTAKILDMDL FSRAVKVYTK NGNALTDSLL
401: KSVLKSLRSV DRVEQSNELL KEMKRGGYVP SGDMQSMIAS SLSRKGKKDE ADEFVDFMES SGNNLDDKAM ASLVEGYCDS GNLDEALVCF EKMVGNTGVS
501: YADYSFEKLV LAYCNKNQVR DAYKLLSAQV TKNQLKPRHS TYKSLVTNLL TKKIARDGGF EEALSLLPIM KDHGFPPFID PFMSYFSSTG KSTEALGFLK
601: AMTSNNFPYI SVVLRVFETM MKSARHSEAQ DLLSLCPNYI RNNPDVLELF NTMKPNESAV EKPLAASA
Arabidopsis Description
Pentatricopeptide repeat-containing protein At5g15980, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF1]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.