Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 6
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX69485 | Canola | mitochondrion | 70.21 | 72.49 |
| Bra008660.1-P | Field mustard | mitochondrion | 70.21 | 72.15 |
| CDY26480 | Canola | mitochondrion | 70.66 | 71.73 |
| AT3G02490.1 | Thale cress | mitochondrion | 66.92 | 67.22 |
| VIT_14s0083g00610.t01 | Wine grape | mitochondrion | 49.1 | 50.46 |
| KRH01461 | Soybean | nucleus | 45.51 | 48.33 |
| KRH45172 | Soybean | mitochondrion | 43.71 | 46.5 |
| PGSC0003DMT400026059 | Potato | mitochondrion | 41.62 | 42.7 |
| GSMUA_Achr1P09410_001 | Banana | mitochondrion | 34.28 | 37.36 |
| Solyc02g089560.2.1 | Tomato | mitochondrion | 10.33 | 31.65 |
| EES04708 | Sorghum | mitochondrion, plastid | 28.29 | 31.09 |
| TraesCS6B01G188700.1 | Wheat | mitochondrion | 27.54 | 30.72 |
| TraesCS6D01G149700.1 | Wheat | mitochondrion | 26.95 | 30.25 |
| HORVU6Hr1G032550.1 | Barley | plastid | 28.29 | 30.05 |
| TraesCS6A01G162500.1 | Wheat | plastid | 27.84 | 28.75 |
| AT3G48250.1 | Thale cress | plastid | 16.02 | 17.23 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:831455 | ProteinID:AED92232.1 | EMBL:AK221891 | ArrayExpress:AT5G15980 |
| EnsemblPlantsGene:AT5G15980 | RefSeq:AT5G15980 | TAIR:AT5G15980 | RefSeq:AT5G15980-TAIR-G | EnsemblPlants:AT5G15980.1 | TAIR:AT5G15980.1 |
| EMBL:AY102122 | Unigene:At.25498 | EMBL:BT002274 | ProteinID:CAC01797.1 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 | GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009451 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0090305 | InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_197102.2 | PFAM:PF01535 | PO:PO:0000005 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007057 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF350 | InterPro:Pentatricopeptide_repeat | UniProt:Q8LPF1 |
| TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI00000AC6D0 | SEG:seg | : | : |
Description
Pentatricopeptide repeat-containing protein At5g15980, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8LPF1]
Coordinates
chr5:+:5213062..5215674
Molecular Weight (calculated)
75302.5 Da
IEP (calculated)
7.410
GRAVY (calculated)
-0.308
Length
668 amino acids
Sequence
(BLAST)
(BLAST)
001: MRYQQWRLML LRSYHRSHLP YLSPCSQVTS ISSRSFSSFI HPGIGALQQS EQLCPLRSPM TSSGNLVKSV GRSFSSEPAV EEKSSAEATV IDIFSRLSGE
101: DEIRKELESS GVVISQDLAL KVLRKLESNP DVAKSFFQWI KEASPEELSS KNYNMMLRIL GGNGLVDEFW GLVDVMKKKG HGLSANVRDK VGDKFQKDGL
201: ESDLLRLRKL FTSDCLDNSA ENVCDRVCKI VMKEEWGDDV EKRVRDLNVE FKSDLVKMIV ERLDVEPRKA LLFFRWIDES DLFKHDEKTY NAMARVLGKE
301: KFLDRFQNIV VEMRSAGYEV EIETYVRVST RFCQTKLIKE AVDLFEIAMA GSSSSNNPTP HCFCLLLKKI VTAKILDMDL FSRAVKVYTK NGNALTDSLL
401: KSVLKSLRSV DRVEQSNELL KEMKRGGYVP SGDMQSMIAS SLSRKGKKDE ADEFVDFMES SGNNLDDKAM ASLVEGYCDS GNLDEALVCF EKMVGNTGVS
501: YADYSFEKLV LAYCNKNQVR DAYKLLSAQV TKNQLKPRHS TYKSLVTNLL TKKIARDGGF EEALSLLPIM KDHGFPPFID PFMSYFSSTG KSTEALGFLK
601: AMTSNNFPYI SVVLRVFETM MKSARHSEAQ DLLSLCPNYI RNNPDVLELF NTMKPNESAV EKPLAASA
101: DEIRKELESS GVVISQDLAL KVLRKLESNP DVAKSFFQWI KEASPEELSS KNYNMMLRIL GGNGLVDEFW GLVDVMKKKG HGLSANVRDK VGDKFQKDGL
201: ESDLLRLRKL FTSDCLDNSA ENVCDRVCKI VMKEEWGDDV EKRVRDLNVE FKSDLVKMIV ERLDVEPRKA LLFFRWIDES DLFKHDEKTY NAMARVLGKE
301: KFLDRFQNIV VEMRSAGYEV EIETYVRVST RFCQTKLIKE AVDLFEIAMA GSSSSNNPTP HCFCLLLKKI VTAKILDMDL FSRAVKVYTK NGNALTDSLL
401: KSVLKSLRSV DRVEQSNELL KEMKRGGYVP SGDMQSMIAS SLSRKGKKDE ADEFVDFMES SGNNLDDKAM ASLVEGYCDS GNLDEALVCF EKMVGNTGVS
501: YADYSFEKLV LAYCNKNQVR DAYKLLSAQV TKNQLKPRHS TYKSLVTNLL TKKIARDGGF EEALSLLPIM KDHGFPPFID PFMSYFSSTG KSTEALGFLK
601: AMTSNNFPYI SVVLRVFETM MKSARHSEAQ DLLSLCPNYI RNNPDVLELF NTMKPNESAV EKPLAASA
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.