CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 5
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G149700.1	Wheat	mitochondrion	65.13	66.55
TraesCS6B01G188700.1	Wheat	mitochondrion	64.97	65.94
HORVU6Hr1G032550.1	Barley	plastid	64.47	62.32
TraesCS6A01G162500.1	Wheat	plastid	63.32	59.51
GSMUA_Achr1P09410_001	Banana	mitochondrion	38.82	38.5
KRH01461	Soybean	nucleus	34.54	33.39
VIT_14s0083g00610.t01	Wine grape	mitochondrion	35.2	32.92
KRH45172	Soybean	mitochondrion	32.73	31.69
CDX69485	Canola	mitochondrion	32.07	30.14
PGSC0003DMT400026059	Potato	mitochondrion	32.07	29.95
Bra008660.1-P	Field mustard	mitochondrion	31.58	29.54
CDX91994	Canola	mitochondrion	31.25	29.14
Bra001047.1-P	Field mustard	mitochondrion	31.25	29.14
CDX74255	Canola	mitochondrion	30.92	28.83
CDY26480	Canola	mitochondrion	31.09	28.72
AT5G15980.1	Thale cress	mitochondrion	31.09	28.29
AT3G02490.1	Thale cress	mitochondrion	30.92	28.27
Solyc02g089560.2.1	Tomato	mitochondrion	6.25	17.43
EES04293	Sorghum	mitochondrion	15.46	16.38

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8082913	UniProt:C5XXK1	ncoils:Coil	EnsemblPlants:EES04708
ProteinID:EES04708	ProteinID:EES04708.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0043231	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	PFAM:PF01535
PANTHER:PTHR24015	PANTHER:PTHR24015:SF986	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:SORBI_3004G082700	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI0001A857BE	RefSeq:XP_002451732.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:6795871..6797873

Molecular Weight (calculated)

66306.6 Da

IEP (calculated)

8.779

GRAVY (calculated)

-0.136

Length

608 amino acids

Sequence
(BLAST)

001: MLRAALTSGG GRLTAVVPRH IGRLFSSSSS SSSTIAALFS DPTPPADPAA AIQSAGVDLS HPDTVPALLL DPGLAGNYPA ASRFFSWAAS DPAAKAALNS
101: RSFNSMLQLA AAHGDAERFW SLVTSMRSKG YGISKPAFRA ASESFRAKDM ARDADLLQDA FAAHGRNAAA AEVCKILRAP GKDDSSNLAM LSESRVEVTE
201: ELVALVVEKV GQFPRQAMVF FQWVEKSAGS GICWGKVYNP MAKVLGREDC IEEFREVLRK MRGKGLEMDR DVYVTVTDRF FKRKMVEDAV DLFRFMASRP
301: EKLSKEDFVV FLKKVVVTGD LDLKLVTRVV SYYQHAGNEV KALAFDSVLK SLRSVARLGE SGRVLMAMKE GGFAPHTVDH EKAILAMCDA GNLEEAHKYM
401: ADVEESGHKL GSKVWSSLVQ KYSLGENVDT AVSCFHEMLE RSGNDNENVG SALEALVSGL CKKKGAKEAF KVLKNLVSKK IVVPWQTTYK YLIHNLIRQG
501: HLKQAFEVLG LMKSHGYPSF IDPCITHISK SGTVDDALGL LNATSSKGLP SRTAHLRLFQ ALLKEDRHEV AQQLLSQSPA SIQNHADVRD IFSRIKVEEP
601: IPAALADG

Best Arabidopsis Sequence Match ( AT3G02490.1 )
(BLAST)

001: MRYQWRSLLF RSYRSSPRPF LSHHSRFQVI SNSTRSFSSF LHERFGVQQR QCLFALRSPL ASSVSRRFSS ESAIEEKLPA ETVVIDVFSR LNGKDEITKE
101: LDSNDVVISH ELALRVLREL ESSPDVAGRF FKWGLEAYPQ KLSSKSYNTM LRIFGVNGLV DEFWRLVDDM KKKGHGVSAN VRDRVGDKFK KDGLENDLER
201: LKELFASGSM DNSVDKVCNR VCKIVMKEVW GADVEKQLRD LKLEFKSDVV KMVLEKLDVD PRKALLFFRW IDESGSFKHD EKTYNAMARV LGKEKFLDRF
301: QHMIEEIRSA GYEMEMETYV RVSARFCQTK MIKEAVELFE FAMAGSISNT PTPHCCSLLL KKIVTAKKLD MDLFTRTLKA YTGNGNVVPD VMLQHVLKSL
401: RSVDRFGQSN EVLKAMNEGG YVPSGDLQSV IASGLSRKGK KDEANELVNF MEASGNHLDD KAMASLVEGH CDAKDLEEAS ECFKKMIGKE GVSYAGYAFE
501: KLVLAYCNSF QARDVYKLFS ELVKQNQLKP WHSTYKIMVR NLLMKKVARD GGFEEALSLL PMMRNHGFPP FVDPFMDYLS NSGTSAEAFA FLKAVTSKKF
601: PSNSMVLRVF EAMLKSARHS EAQDLLSMSP SYIRRNAEVL ELFNTMKPEK CSLEKPLPAP AQIEA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M891]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.