CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d041968_P001	Maize	mitochondrion	89.9	90.69
Zm00001d011788_P001	Maize	mitochondrion	83.45	80.1
Os01t0970900-01	Rice	plastid	67.25	67.36
TraesCS3D01G530500.1	Wheat	mitochondrion	61.5	63.95
TraesCS3B01G592800.1	Wheat	mitochondrion	63.41	62.76
HORVU3Hr1G114240.1	Barley	mitochondrion	64.29	62.33
TraesCS3A01G525400.1	Wheat	mitochondrion	63.41	62.12
GSMUA_Achr8P28550_001	Banana	cytosol	48.43	56.39
VIT_17s0000g09330.t01	Wine grape	mitochondrion	47.21	45.32
CDY21816	Canola	mitochondrion	42.86	40.73
Bra019536.1-P	Field mustard	mitochondrion	42.86	40.66
CDX77895	Canola	mitochondrion	42.51	40.2
AT3G48250.1	Thale cress	plastid	42.51	39.29
KRH03217	Soybean	mitochondrion	43.03	38.9
PGSC0003DMT400046833	Potato	mitochondrion	43.21	38.63
KRH03849	Soybean	mitochondrion	38.33	34.65
CDY39572	Canola	mitochondrion	34.32	34.02
Bra018070.1-P	Field mustard	mitochondrion	35.37	33.78
CDY48163	Canola	mitochondrion	34.67	33.11
Solyc03g112190.2.1	Tomato	mitochondrion	40.77	31.62
KRH03848	Soybean	cytosol, plastid	29.79	29.69
EES04708	Sorghum	mitochondrion, plastid	16.38	15.46

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:8078052	UniProt:C5XJD2	EnsemblPlants:EES04293	ProteinID:EES04293
ProteinID:EES04293.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518
GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380
GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF795	InterPro:Pentatricopeptide_repeat
EnsemblPlantsGene:SORBI_3003G442800	unigene:Sbi.5231	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001A85828	RefSeq:XP_002459173.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:-:74110824..74113049

Molecular Weight (calculated)

63782.4 Da

IEP (calculated)

7.299

GRAVY (calculated)

-0.206

Length

574 amino acids

Sequence
(BLAST)

001: MAALPPLRRL LALRGHRRLL STTTPAASSS NPPTPEAVLY DIHSLSKDPS QALAVFRRSA AAGQPVSSAA YNLTLRTLAS HPSSAQRHFW PFLREMQEAG
101: HSVDQGTYLA ALASFKKASL TADYASLTAH YNKFRKGANS AAAAAAAAAA EAVRDHDAAG LDSRLADIGL LPLTETTVIT VLRELREYPI KALAFFRWAE
201: QQQGYTHSSV AYNAMARVLG REESVPEFWD LIQEIKAAGM HVDIDTYLKL SRNFQKRHMV REAVELYELM MDGPFKPSQQ DGPIIIRRIS LGRSPDLELV
301: NRVVNKFEAV WGVKTKELLD GVHRALTSNG KFDEAAEIVQ TMRDQGHQPD NVTYSQLVYG LCKAGKLEDA RKVLDEMEAE GCVPDLKTWT LLIQGYCSAG
401: DVDRAVQYFT EMIEKGLDAD ADLLDVILKG LCSHEKVEEA YSLFVEMVDK AELRPFQGTC QRLIGDLLRV NKLEEALALL KTMKTCKFPA FVDPFHPYIA
501: KHGTVEDARN FFKALTVKTS PAPAVYVDVL KLFFAEGRYS EAQELLYKCP NHIRKHPHVT KLFESIKVES ASAS

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.