CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21816	Canola	mitochondrion	93.9	94.37
AT3G48250.1	Thale cress	plastid	83.03	81.16
CDY39572	Canola	mitochondrion	67.38	70.64
CDY48163	Canola	mitochondrion	68.86	69.55
VIT_17s0000g09330.t01	Wine grape	mitochondrion	54.53	55.35
KRH03217	Soybean	mitochondrion	54.53	52.13
PGSC0003DMT400046833	Potato	mitochondrion	54.53	51.56
GSMUA_Achr8P28550_001	Banana	cytosol	41.02	50.51
KRH03849	Soybean	mitochondrion	47.28	45.2
Os01t0970900-01	Rice	plastid	41.35	43.8
TraesCS3D01G530500.1	Wheat	mitochondrion	39.54	43.48
Zm00001d041968_P001	Maize	mitochondrion	40.53	43.23
Solyc03g112190.2.1	Tomato	mitochondrion	52.39	42.97
TraesCS3B01G592800.1	Wheat	mitochondrion	41.02	42.93
HORVU3Hr1G114240.1	Barley	mitochondrion	41.52	42.57
EES04293	Sorghum	mitochondrion	40.2	42.51
TraesCS3A01G525400.1	Wheat	mitochondrion	40.86	42.32
KRH03848	Soybean	cytosol, plastid	37.07	39.06
Zm00001d011788_P001	Maize	mitochondrion	37.89	38.46
CDX74255	Canola	mitochondrion	19.28	17.94
CDX91994	Canola	mitochondrion	18.78	17.48
CDX69485	Canola	mitochondrion	17.13	16.07
CDY26480	Canola	mitochondrion	17.13	15.81

Protein Annotations

EnsemblPlants:CDX77895	EnsemblPlantsGene:GSBRNA2T00129111001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF795
PFAM:PF01535	PFAM:PF12854	PFscan:PS51375	ProteinID:CDX77895	ProteinID:CDX77895.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EDADC5	MapMan:35.1	:	:	:

Description

BnaC03g53240D

Coordinates

chrLK031813:-:1776972..1778795

Molecular Weight (calculated)

68859.7 Da

IEP (calculated)

7.810

GRAVY (calculated)

-0.255

Length

607 amino acids

Sequence
(BLAST)

001: MYRSKAVLSS LRNAYSKIST RSYLSRAQVG FPSNSSSIQL PWQVRSFSSK PECMLQLVLE NAWSKKVEEE LKNPDTSLTH ETAIYLLRKL DKHPEKAYSF
101: LDWVIRESGL TPSSPLYSTM LRILVLQQRS MKRFWMTLTD MKQGGFYMDE ETYKTLYSLL TKADAAALAH FYERMLKDNA VSDVAGSVSA AVSKADWSCE
201: VERELQEMKL PFSDNFVIRV LKELREHPLK ALAFFHWVGG GTSSGYRHGT VTYNAALRVL ARPSSVAEFW SVVHEMKTAG HEVDLDTYIK VSRQFQKSRM
301: MVEAVQLYEF MMDGPFKPSV QDCSLLLRSL SAGPSPDLDL VFRVSRKYES TGKSLSKAVY DGIHRSLTSV ARFEEAEEIM KAMRDAGYEP DNITYSQLVF
401: GLCKANRLEE ARGVVDQMEA QGCFPDIKTW TILIQGHCKN NEVDKAFACF ANMLEKGFDI DSDLLDVLVG GFLSQNRIEG ACKFLMEMVR NANVKPWQTT
501: YKGLIDKLLE IKKGDEALDL LELMKKQNYP AYAEPFDGYL AKFGTLEDAK KFLDVLSSKD SPSFAAYFHL VEAFYREGRL ADAKNLVFIS PHHFKTHPKI
601: TALFGAA

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.