Factsheet for VIT_17s0000g09330.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03217	Soybean	mitochondrion	62.21	58.58
PGSC0003DMT400046833	Potato	mitochondrion	61.37	57.17
GSMUA_Achr8P28550_001	Banana	cytosol	46.49	56.39
Bra019536.1-P	Field mustard	mitochondrion	55.85	55.21
CDY21816	Canola	mitochondrion	55.52	54.97
CDX77895	Canola	mitochondrion	55.35	54.53
AT3G48250.1	Thale cress	plastid	56.52	54.43
KRH03849	Soybean	mitochondrion	54.68	51.5
Os01t0970900-01	Rice	plastid	46.32	48.34
Zm00001d041968_P001	Maize	mitochondrion	45.48	47.8
TraesCS3D01G530500.1	Wheat	mitochondrion	43.98	47.64
EES04293	Sorghum	mitochondrion	45.32	47.21
Solyc03g112190.2.1	Tomato	mitochondrion	57.86	46.76
TraesCS3A01G525400.1	Wheat	mitochondrion	45.65	46.59
TraesCS3B01G592800.1	Wheat	mitochondrion	44.98	46.38
HORVU3Hr1G114240.1	Barley	mitochondrion	45.32	45.78
CDY39572	Canola	mitochondrion	44.15	45.6
Bra018070.1-P	Field mustard	mitochondrion	45.65	45.42
CDY48163	Canola	mitochondrion	44.98	44.76
KRH03848	Soybean	cytosol, plastid	42.81	44.44
Zm00001d011788_P001	Maize	mitochondrion	43.81	43.81
VIT_14s0083g00610.t01	Wine grape	mitochondrion	23.41	21.54

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100246746	wikigene:100246746	MapMan:35.1	ProteinID:CCB42933	ProteinID:CCB42933.1
UniProt:F6GTR7	EMBL:FN594950	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	EntrezGene:LOC100246746	wikigene:LOC100246746	PFAM:PF01535	PFAM:PF12854	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF795	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000210AC18
ArrayExpress:VIT_17s0000g09330	EnsemblPlantsGene:VIT_17s0000g09330	EnsemblPlants:VIT_17s0000g09330.t01	RefSeq:XP_002277390	RefSeq:XP_002277390.1	SEG:seg

Description

No Description!

Coordinates

chr17:-:10893474..10895655

Molecular Weight (calculated)

68768.2 Da

IEP (calculated)

7.295

GRAVY (calculated)

-0.273

Length

598 amino acids

Sequence
(BLAST)

001: MNRAKAILFS IRFTNSFRST QFRRASSLCY QPNSIVELVL ENDWSDELES ELEKSSSVLT HETVIYVLKK LDKDPQRTWN FFNWVTEKNG FRPSSAMYSL
101: ILRSLVHGES MKQFWVTIRK MKEQGFCIDK ETYLTILGVF KKGKMASEEV ALTHFYNRMV QENAMDEVVK KVVELVTMSV WSSEVEKKLG ELKNSFSDNF
201: VLHVLRELRG YPLKALRFFQ WVGECPGYEH SSITYNVIAR VLGRDDSIGE FWSMVEEMKS KGHEMDIDTY IKISRQFQKN KMLEDAVKLY EIMMDGPYKP
301: SVQDCTMLLR SISLSSNPDL ALVFRVTEKY EAVGNSLCKA VYDGIHRSLT SVGRFDEAGK IMESMRSAGC EPDNITYSQL VYGLCKARKL EEACKLLDEM
401: EACGCVPDIK TWTILIQGHC AAKEVDKALI CFAKMMEKNC DADADLLEVL INGFLSQKRI DGAYKLLVEM VNTAHLVPWQ ATYKLMINKL LGVRKLEEAI
501: NLLHLMKKQN YPPFPEPFIE YISKFGTVED AGEFLNALSA KKYPSQSAYV HVFESFFQEG RESEAKDLLY KCPHHIRKHP DICKLFGSAK SEYATEKR

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.