CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019536.1-P	Field mustard	mitochondrion	99.01	98.84
CDX77895	Canola	mitochondrion	94.37	93.9
AT3G48250.1	Thale cress	plastid	81.79	79.55
CDY39572	Canola	mitochondrion	66.56	69.43
CDY48163	Canola	mitochondrion	67.72	68.05
VIT_17s0000g09330.t01	Wine grape	mitochondrion	54.97	55.52
KRH03217	Soybean	mitochondrion	54.47	51.81
PGSC0003DMT400046833	Potato	mitochondrion	54.3	51.09
GSMUA_Achr8P28550_001	Banana	cytosol	41.06	50.3
KRH03849	Soybean	mitochondrion	47.52	45.2
Zm00001d041968_P001	Maize	mitochondrion	41.06	43.59
Os01t0970900-01	Rice	plastid	41.23	43.46
TraesCS3D01G530500.1	Wheat	mitochondrion	39.4	43.12
EES04293	Sorghum	mitochondrion	40.73	42.86
Solyc03g112190.2.1	Tomato	mitochondrion	52.32	42.7
TraesCS3B01G592800.1	Wheat	mitochondrion	40.89	42.59
HORVU3Hr1G114240.1	Barley	mitochondrion	41.39	42.23
TraesCS3A01G525400.1	Wheat	mitochondrion	40.73	41.98
KRH03848	Soybean	cytosol, plastid	37.42	39.24
Zm00001d011788_P001	Maize	mitochondrion	38.24	38.63
CDX74255	Canola	mitochondrion	18.54	17.18
CDX91994	Canola	mitochondrion	18.21	16.87
CDX69485	Canola	mitochondrion	16.39	15.3
CDY26480	Canola	mitochondrion	16.39	15.05

Protein Annotations

EnsemblPlants:CDY21816	EnsemblPlantsGene:GSBRNA2T00016377001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF795
PFAM:PF01535	PFAM:PF12854	PFscan:PS51375	ProteinID:CDY21816	ProteinID:CDY21816.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0004EEF9D5	UniProt:A0A078G8W0	MapMan:35.1	:	:

Description

BnaA06g20850DBnaA06g20850D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G8W0]

Coordinates

chrLK032124:-:601339..603224

Molecular Weight (calculated)

68383.9 Da

IEP (calculated)

7.194

GRAVY (calculated)

-0.280

Length

604 amino acids

Sequence
(BLAST)

001: MYRSKAVLSS LRNAYSKISA QVGSSSTQFP WQVRSFSSRP ESMLQLVLEN AWSKKVEEGL KNPDTSLTHE TAIYLLRKLD KHPEKAYSFL HWVIRESGLT
101: PSSPLYSTML RILVQQRSMK RFWMILTDMK QGGFYMDEET YKTLYSLLNK EEDNNSKADA AALAHFYERM LKENAVSDVA ASVSAAVSKG DWSCEVEREL
201: QEMKLPLSDN FVIRVLKELR EHPLKALAFF HWVGGATSSG YRHSTVTYNA ALRVLARPSS VAEFWSVVDE MKTTGGHEVD LDTYIKVSRQ FQKSRMMVEA
301: VKLYEFMMDG PFKPSVQDCS LLLRSLSAGP SPDLDLVFRV SSKYESTGKS LSKAVYDGIH RSSLTSVARF EEAEEIMKAM RDAGYEPDNI TYSQLVFGLC
401: KANRLEEARG VVDQMEAQGC FPDIKTWTIL IQGHCKNNEV DKAFACFANM LEKGFDIDSD LLDVLVGGFL SQNRIEGACK FLMEMVRNAN VKPWQTTYKA
501: LIDKLLEIKK GDEALDLLEL MKKQNYPAYA EPFDGYLAKF GTLEDAKKFL DVLSSKDSPS FAAYFHLVEA FYREGRLADA KNLVFISPHH FKTHPKITAL
601: FGAA

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.