CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03849	Soybean	mitochondrion	61.98	56.22
KRH03217	Soybean	mitochondrion	52.26	47.4
VIT_17s0000g09330.t01	Wine grape	mitochondrion	44.44	42.81
CDY21816	Canola	mitochondrion	39.24	37.42
Bra019536.1-P	Field mustard	mitochondrion	39.06	37.19
CDX77895	Canola	mitochondrion	39.06	37.07
GSMUA_Achr8P28550_001	Banana	cytosol	31.6	36.92
PGSC0003DMT400046833	Potato	mitochondrion	40.8	36.6
AT3G48250.1	Thale cress	plastid	38.02	35.27
CDY39572	Canola	mitochondrion	33.33	33.16
CDY48163	Canola	mitochondrion	33.68	32.28
Bra018070.1-P	Field mustard	mitochondrion	33.51	32.11
Zm00001d041968_P001	Maize	mitochondrion	30.38	30.76
Os01t0970900-01	Rice	plastid	30.03	30.19
TraesCS3D01G530500.1	Wheat	mitochondrion	28.82	30.07
TraesCS3A01G525400.1	Wheat	mitochondrion	30.56	30.03
Solyc03g112190.2.1	Tomato	mitochondrion	38.37	29.86
EES04293	Sorghum	mitochondrion	29.69	29.79
HORVU3Hr1G114240.1	Barley	mitochondrion	30.03	29.22
TraesCS3B01G592800.1	Wheat	mitochondrion	29.34	29.14
Zm00001d011788_P001	Maize	mitochondrion	28.99	27.93
KRH01461	Soybean	nucleus	16.15	14.79
KRH45172	Soybean	mitochondrion	15.97	14.65

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EMBL:ACUP02010364	EnsemblPlantsGene:GLYMA_17G124200	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787
GO:GO:0090305	UniProt:I1MUI7	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH03848	ProteinID:KRH03848
ProteinID:KRH03848.1	PFAM:PF01535	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF795	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00023D4FF0	:	:	:

Description

hypothetical protein

Coordinates

chr17:-:9915769..9920971

Molecular Weight (calculated)

66553.0 Da

IEP (calculated)

8.415

GRAVY (calculated)

-0.118

Length

576 amino acids

Sequence
(BLAST)

001: MNRLKAIVAN INFLESPLAS RVTHFSLCTP SPLLDQSHHF RFPNIHQKLY FSSKSNSIVE LILTSDWSKG LERESEKCCP FMTHETALDL FFNWVSTEEW
101: FRVNSKLYSL ILRILATEET IKQFWITLWT MKRKKFYYDE EMYLPILADF RRKIFTRFYN WSIQQNASVC TKVVDIISRS EWGDEVMGEL SKLKIHLSDN
201: NFVIRVLKEL RETPLKACGF FHWVDNQSGV LARTNSIEKL WRVVEEMKSA GHELDIETYI KLSRMLLKNK MLEDVVKLYE LIMDGHCSYK PSVGDCLLLL
301: KSISASDMPD LDLVFSFQDF YEIVNRAFSA RQYMMESTTE NVVNHMRNAG YEPDNTYIQS KACKVLEEME SCGCIPDIKI WTILIQGHCD ANEIDRALLC
401: LHETIEKGCK ADAAVLGVLI DSFLSQKRID DGYKLLVKIV RKHGKSPTQN TYLKLIDNLL EIGKFEEALD LLCLMISHTF TPFIDAVKFL KAWSKGSPQS
501: RFAYLRVFKS LLGKGRHRES KYLLNRLKAY PFQVLCSSNM DGCVHAYRRL IPFLNPKTLK IAKANASAIL LSGSAI

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.