Factsheet for Bra019536.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21816	Canola	mitochondrion	98.84	99.01
AT3G48250.1	Thale cress	plastid	81.82	79.71
Bra018070.1-P	Field mustard	mitochondrion	67.27	67.72
VIT_17s0000g09330.t01	Wine grape	mitochondrion	55.21	55.85
KRH03217	Soybean	mitochondrion	54.55	51.97
PGSC0003DMT400046833	Potato	mitochondrion	54.21	51.09
GSMUA_Achr8P28550_001	Banana	cytosol	40.99	50.3
KRH03849	Soybean	mitochondrion	47.93	45.67
Zm00001d041968_P001	Maize	mitochondrion	41.16	43.76
Os01t0970900-01	Rice	plastid	41.32	43.63
TraesCS3D01G530500.1	Wheat	mitochondrion	39.5	43.3
EES04293	Sorghum	mitochondrion	40.66	42.86
TraesCS3B01G592800.1	Wheat	mitochondrion	40.99	42.76
Solyc03g112190.2.1	Tomato	mitochondrion	52.23	42.7
HORVU3Hr1G114240.1	Barley	mitochondrion	41.49	42.4
TraesCS3A01G525400.1	Wheat	mitochondrion	40.83	42.15
KRH03848	Soybean	cytosol, plastid	37.19	39.06
Zm00001d011788_P001	Maize	mitochondrion	38.35	38.8
Bra001047.1-P	Field mustard	mitochondrion	18.02	16.72
Bra008660.1-P	Field mustard	mitochondrion	16.2	15.08

Protein Annotations

EnsemblPlants:Bra019536.1	EnsemblPlants:Bra019536.1-P	EnsemblPlantsGene:Bra019536	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF795	PFAM:PF01535	PFAM:PF12854	PFscan:PS51375	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI000253F06A	UniProt:M4DSP3	MapMan:35.1	:	:	:

Description

AT3G48250 (E=2e-281) | pentatricopeptide (PPR) repeat-containing protein

Coordinates

chrA06:+:12396904..12398721

Molecular Weight (calculated)

68411.0 Da

IEP (calculated)

7.194

GRAVY (calculated)

-0.276

Length

605 amino acids

Sequence
(BLAST)

001: MYRSKAVLSS LRNAYSKISA QVGSSSIQFP WQVRSFSSRP ESMLQLVLEN AWSKKVEEGL KNPDTSLTHE TAIYLLRKLD KHPEKAYSFL HWVIRESGLT
101: PSSPLYSTML RVLVQQRSMK RFWMTLSDMK QGGFYMDEET YKTLYSLLNK EEDNNSKADA AALAHFYERM LKENAVSDVA ASVSAAVSKG DWSCEVEREL
201: QEMKLPLSDN FVIRVLKELR EHPLKALAFF HWVGVGGGTS SGYRHSTVTY NAALRVLARP SSVAEFWSVV DEMKTTGGHE VDLDTYIKVS RQFQKSRMMV
301: EAVKLYEFMM DGPFKPSVQD CSLLLRSLSA GPSPDLDLVF RVSSKYESTG KSLSKAVYDG IHRSLTSVAR FEEAEEIMKA MRDAGYEPDN ITYSQLVFGL
401: CKANRLEEAR GVVDQMEAQG CFPDIKTWTI LIQGHCKNNE VDKAFACFAN MLEKGFDIDS DLLDVLVGGF LSQNRIEGAC KFLMEMVRNA NVKPWQTTYK
501: ALIDKLLEIK KGDEALDLLE LMKKQNYPAY AEPFDGYLAK FGTLEDAKKF LDVLSSKDSP SFAAYFHLVE AFYREGRLAD AKNLVFISPH HFKTHPKITA
601: LFGAA

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.