CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03217	Soybean	mitochondrion	63.15	63.15
KRH03848	Soybean	cytosol, plastid	56.22	61.98
VIT_17s0000g09330.t01	Wine grape	mitochondrion	51.5	54.68
Bra019536.1-P	Field mustard	mitochondrion	45.67	47.93
CDY21816	Canola	mitochondrion	45.2	47.52
CDX77895	Canola	mitochondrion	45.2	47.28
AT3G48250.1	Thale cress	plastid	45.67	46.7
GSMUA_Achr8P28550_001	Banana	cytosol	36.06	46.45
PGSC0003DMT400046833	Potato	mitochondrion	46.14	45.64
CDY39572	Canola	mitochondrion	39.69	43.52
Bra018070.1-P	Field mustard	mitochondrion	39.21	41.43
CDY48163	Canola	mitochondrion	39.21	41.43
TraesCS3D01G530500.1	Wheat	mitochondrion	35.12	40.4
Os01t0970900-01	Rice	plastid	35.28	39.09
HORVU3Hr1G114240.1	Barley	mitochondrion	36.22	38.85
Zm00001d041968_P001	Maize	mitochondrion	34.8	38.84
TraesCS3A01G525400.1	Wheat	mitochondrion	35.75	38.74
TraesCS3B01G592800.1	Wheat	mitochondrion	35.28	38.62
EES04293	Sorghum	mitochondrion	34.65	38.33
Solyc03g112190.2.1	Tomato	mitochondrion	44.25	37.97
Zm00001d011788_P001	Maize	mitochondrion	33.23	35.28
KRH01461	Soybean	nucleus	18.58	18.76
KRH45172	Soybean	mitochondrion	18.27	18.47

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100801257	MapMan:35.1	EMBL:ACUP02010364	EnsemblPlantsGene:GLYMA_17G124300	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	UniProt:I1MUI8	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH03849
ProteinID:KRH03849	ProteinID:KRH03849.1	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF795	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233E500	:

Description

hypothetical protein

Coordinates

chr17:-:9922683..9925057

Molecular Weight (calculated)

72644.1 Da

IEP (calculated)

8.443

GRAVY (calculated)

-0.195

Length

635 amino acids

Sequence
(BLAST)

001: MNRLRAIVVN LRFLESPLAS RVTATRSLLL TRNQVTHFSL CTPSPLLDNS HHFLLPNIHQ NLYFSSKPNS IVELVLTSDW SKGLEQELEK CYPSMTHETV
101: VYVLKRMEAN PEKAWCFFNW VSAKEWYRPS SSLYGLILRV LATEETIKLF WITLRTMKTK GFYFDEEMYF PILAGFKRKN MNKDRVSLTR FYSQGIQENA
201: MQIVVTKVVD IISGSEWGDE VMSNLAKLEI RMSDNFVTRV LKELRNCPLK AYEFFNWVGK QSGYEHDTVT YNAIARVLAS TDSIEKFWSV IEEMKSVGHE
301: LDIDTYIKIS KKLQKNKMME DAVKLYELTM DGSYKPSVKD CSLLLKSISA SDDPNLDLVF RVSKKYESTW HTLSKAIYDG IHRSLSGAGK LDEAESIVNH
401: MRNAGYEPDN ITYNQTIFGF CKMRKLDEAC KVLEEMESCG FIPEIKTWTI LIQGHCVANE VDRALLCLNR MIEKGCNADA AVLGVLIGSF LGQKRIDDAY
501: KLLVEIVSKH GTSPRHGTYA KLIDNLLGIG KLEEALDLHC LMRNHEFTPI IEPFVQYISK FGSIEDAIKF LKSKGTPRSH SVYFRVFKSL LGNGRLSDAK
601: DLLSKIPYIS KRKKILELFS SMENCTVHGL SHISQ

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.