CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03849	Soybean	mitochondrion	63.15	63.15
VIT_17s0000g09330.t01	Wine grape	mitochondrion	58.58	62.21
Bra019536.1-P	Field mustard	mitochondrion	51.97	54.55
CDX77895	Canola	mitochondrion	52.13	54.53
CDY21816	Canola	mitochondrion	51.81	54.47
AT3G48250.1	Thale cress	plastid	51.97	53.14
PGSC0003DMT400046833	Potato	mitochondrion	53.7	53.12
GSMUA_Achr8P28550_001	Banana	cytosol	41.1	52.94
KRH03848	Soybean	cytosol, plastid	47.4	52.26
CDY39572	Canola	mitochondrion	42.05	46.11
Bra018070.1-P	Field mustard	mitochondrion	43.46	45.92
CDY48163	Canola	mitochondrion	43.15	45.59
Solyc03g112190.2.1	Tomato	mitochondrion	51.81	44.46
Zm00001d041968_P001	Maize	mitochondrion	39.06	43.59
TraesCS3D01G530500.1	Wheat	mitochondrion	37.64	43.3
EES04293	Sorghum	mitochondrion	38.9	43.03
Os01t0970900-01	Rice	plastid	38.74	42.93
TraesCS3A01G525400.1	Wheat	mitochondrion	38.74	41.98
TraesCS3B01G592800.1	Wheat	mitochondrion	38.11	41.72
HORVU3Hr1G114240.1	Barley	mitochondrion	38.27	41.05
Zm00001d011788_P001	Maize	mitochondrion	37.32	39.63
KRH45172	Soybean	mitochondrion	18.58	18.79
KRH01461	Soybean	nucleus	18.27	18.44

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100815857	MapMan:35.1	EMBL:ACUP02010337	EnsemblPlantsGene:GLYMA_17G084400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	UniProt:I1MTC3	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH03217
ProteinID:KRH03217	ProteinID:KRH03217.1	PFAM:PF17177	InterPro:PPR_long	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF795	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233E535	SEG:seg

Description

hypothetical protein

Coordinates

chr17:+:6526015..6528590

Molecular Weight (calculated)

73331.9 Da

IEP (calculated)

8.347

GRAVY (calculated)

-0.268

Length

635 amino acids

Sequence
(BLAST)

001: MNRVKAIASS LRTLESSLAT RVLVTRNQVT HFSLHNPLPL FDRSHHLRFP ITHHKLYFST KPKPNSIVEL LLTNDWSQAL ELKLENRFPS MPHETVLYVI
101: KRLDKNPEKA SCFFNWVCKK VWFRPSCSVY SLIVRILAAK DTMKQFWVTL RMMKENGFFL DEETYLTISV GFKREKMDSD SVALTHFYNR MLEENAMQSV
201: VSNVVGIISR SEWGDEVVGE LAKLEIQLSD NFVIRVLKEL RKTPLKAYKF FHWVGKQSGY EHDTVTYNAV ARVLPRAESI EEFWSVIEEM KRVGHELDID
301: TYIKITRQLQ RNRMMEDAVK LYELMMDGSC KPLVQDCNML LKSISANDKP NLDLVFRVAK KYESTGHTLS KAIYDGIHRS LTSAGNFDEA ENIVRTMRNA
401: GYEPDNITYS QMVFGLCKMR RFEEACKVLE DMESSRCIPD IKTWTILIQG HCSANEVDKA LLCFAKMIEK GCDPDADLLD VLADGFLSQK RIEGAYELVA
501: EISRKCRISP WQATYKKLIE KLLGVMKFEE ALELLRLMKS HNYPPYHLPF VPYISKFGSV EDAEAFLKAL SVKSYPSHIV YVQVFESLFR EGRLSEAKDL
601: LYKTPHHIRT HSKICKLFGS SETKSDTQAQ LLPDP

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.