Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
mitochondrion:
27297264
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d041968_P001 | Maize | mitochondrion | 81.44 | 85.59 |
| EES04293 | Sorghum | mitochondrion | 80.1 | 83.45 |
| Os01t0970900-01 | Rice | plastid | 63.88 | 66.67 |
| TraesCS3D01G530500.1 | Wheat | mitochondrion | 58.03 | 62.86 |
| TraesCS3A01G525400.1 | Wheat | mitochondrion | 61.04 | 62.29 |
| TraesCS3B01G592800.1 | Wheat | mitochondrion | 59.7 | 61.55 |
| HORVU3Hr1G114240.1 | Barley | mitochondrion | 60.87 | 61.49 |
| GSMUA_Achr8P28550_001 | Banana | cytosol | 46.82 | 56.8 |
| VIT_17s0000g09330.t01 | Wine grape | mitochondrion | 43.81 | 43.81 |
| Bra019536.1-P | Field mustard | mitochondrion | 38.8 | 38.35 |
| CDY21816 | Canola | mitochondrion | 38.63 | 38.24 |
| CDX77895 | Canola | mitochondrion | 38.46 | 37.89 |
| AT3G48250.1 | Thale cress | plastid | 38.96 | 37.52 |
| KRH03217 | Soybean | mitochondrion | 39.63 | 37.32 |
| PGSC0003DMT400046833 | Potato | mitochondrion | 39.63 | 36.92 |
| KRH03849 | Soybean | mitochondrion | 35.28 | 33.23 |
| CDY39572 | Canola | mitochondrion | 31.27 | 32.3 |
| Bra018070.1-P | Field mustard | mitochondrion | 32.11 | 31.95 |
| CDY48163 | Canola | mitochondrion | 31.77 | 31.61 |
| Solyc03g112190.2.1 | Tomato | mitochondrion | 37.63 | 30.41 |
| KRH03848 | Soybean | cytosol, plastid | 27.93 | 28.99 |
Protein Annotations
| EnsemblPlants:Zm00001d011788_P001 | EnsemblPlants:Zm00001d011788_T001 | EnsemblPlantsGene:Zm00001d011788 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 |
| PANTHER:PTHR24015:SF795 | PFAM:PF01535 | PFAM:PF12854 | PFscan:PS51375 | ProteinID:AQK98020.1 | SEG:seg |
| TIGRFAMs:TIGR00756 | UniParc:UPI000220A73E | UniProt:K7V1D1 | MapMan:35.1 | : | : |
Description
Pentatricopeptide repeat-containing protein chloroplastic
Coordinates
chr8:+:161618982..161621182
Molecular Weight (calculated)
66767.5 Da
IEP (calculated)
9.043
GRAVY (calculated)
-0.286
Length
598 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKKNSFIPQ PSSLPRRKAP KPPPPTAALP PLRRLLALRG HRRLLSTPAA SSNNRLSPEA VLYNIHSLSK DPSQALAVFR RSVAAGQPVG SAAYNLMLRT
101: LASHPSAQRH FWPFLREMQE AGHSVDQGTY LAALASFKKA SLTADYASLT AHYDKFRKGA KSATAAAEAV RDHDAAGLDS RLSAIGLLPL TETSVTTVLR
201: ELREHPIKAL AFFRWAGRQQ GYTHSSVAYN AMARVLGREE SVPEFWDLIR ETKAAGMHVD IDTYLKLSRN FQRRHMVREA VELYELMMDG PFKPAQQDGP
301: IIIRRISMGP SPDLELVNRV VNKFEAVWGV KTKELLDGVH RALTRNGMFD EAAEIVQTMK AQGHQPDNVT YSQLVYGLCK ADKLEDARKV LDEMEAEGCV
401: PDLKTWTLLI HGCCLAGDVD RAVQYLTEMI EKGLDADANL LDVILKGLCS HEKVEEAYSF FIEMVDKTEL RPWQGTCQHL INDLLRVNKL EEALSLLKTM
501: KTCKFPPFAD PFPPYIAKYG TVEDARNFFK AMTVNTSPEP VAYLHVLKLF FAEGRYSEAQ DLLYGCPNHI RKHPDVIKLF GSIKVESASA SRLGSSKQ
101: LASHPSAQRH FWPFLREMQE AGHSVDQGTY LAALASFKKA SLTADYASLT AHYDKFRKGA KSATAAAEAV RDHDAAGLDS RLSAIGLLPL TETSVTTVLR
201: ELREHPIKAL AFFRWAGRQQ GYTHSSVAYN AMARVLGREE SVPEFWDLIR ETKAAGMHVD IDTYLKLSRN FQRRHMVREA VELYELMMDG PFKPAQQDGP
301: IIIRRISMGP SPDLELVNRV VNKFEAVWGV KTKELLDGVH RALTRNGMFD EAAEIVQTMK AQGHQPDNVT YSQLVYGLCK ADKLEDARKV LDEMEAEGCV
401: PDLKTWTLLI HGCCLAGDVD RAVQYLTEMI EKGLDADANL LDVILKGLCS HEKVEEAYSF FIEMVDKTEL RPWQGTCQHL INDLLRVNKL EEALSLLKTM
501: KTCKFPPFAD PFPPYIAKYG TVEDARNFFK AMTVNTSPEP VAYLHVLKLF FAEGRYSEAQ DLLYGCPNHI RKHPDVIKLF GSIKVESASA SRLGSSKQ
001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A
Arabidopsis Description
Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.