CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018070.1-P	Field mustard	mitochondrion	98.17	98.17
CDY39572	Canola	mitochondrion	87.69	91.02
CDX77895	Canola	mitochondrion	69.55	68.86
CDY21816	Canola	mitochondrion	68.05	67.72
AT3G48250.1	Thale cress	plastid	64.89	62.8
VIT_17s0000g09330.t01	Wine grape	mitochondrion	44.76	44.98
KRH03217	Soybean	mitochondrion	45.59	43.15
PGSC0003DMT400046833	Potato	mitochondrion	44.26	41.43
GSMUA_Achr8P28550_001	Banana	cytosol	33.94	41.38
KRH03849	Soybean	mitochondrion	41.43	39.21
Os01t0970900-01	Rice	plastid	34.61	36.3
HORVU3Hr1G114240.1	Barley	mitochondrion	35.44	35.98
TraesCS3B01G592800.1	Wheat	mitochondrion	34.61	35.86
TraesCS3D01G530500.1	Wheat	mitochondrion	32.78	35.69
TraesCS3A01G525400.1	Wheat	mitochondrion	34.78	35.67
Zm00001d041968_P001	Maize	mitochondrion	33.11	34.97
Solyc03g112190.2.1	Tomato	mitochondrion	42.76	34.73
EES04293	Sorghum	mitochondrion	33.11	34.67
KRH03848	Soybean	cytosol, plastid	32.28	33.68
Zm00001d011788_P001	Maize	mitochondrion	31.61	31.77
CDX74255	Canola	mitochondrion	17.47	16.1
CDX91994	Canola	mitochondrion	17.14	15.8
CDX69485	Canola	mitochondrion	16.31	15.15
CDY26480	Canola	mitochondrion	16.47	15.05

Protein Annotations

EnsemblPlants:CDY48163	EnsemblPlantsGene:GSBRNA2T00088976001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF795
PFAM:PF12854	PFscan:PS51375	ProteinID:CDY48163	ProteinID:CDY48163.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI0004EE79EB	UniProt:A0A078IG96	MapMan:35.1	:	:	:

Description

BnaA06g16700DBnaA06g16700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG96]

Coordinates

chrLK032757:-:91978..93783

Molecular Weight (calculated)

68605.6 Da

IEP (calculated)

7.473

GRAVY (calculated)

-0.319

Length

601 amino acids

Sequence
(BLAST)

001: MYSRSKAVMS CLRNAYSKIS TRSYQTRLQV DFYSNSYSSF GSPWQFRSFS SKPESMLQLV LENDWSKEVV EGLRKPDTPL THETAIYVLR KLAKHPDKAY
101: SFLDWVIRES DLTPSSPLYS TMLRMILVQQ RPMERFRTTL TDMKQGGFCL DEETYKTIYT LLNRESYKDA KALARFYSDN AMSVVADNVS ASVSKKDWGC
201: EVERELQGMK LPLSDHNFVI RVLEGLKEHP LKALSFLRWV GGCQKHSTVT YNAALRVLAR PSSVAEFWSV VDEMKEAGHE VDFDTYIKVS RQFQMSRMMM
301: IEAVKLYEFM TDGPFKPSVE DCCLLLKSLS AGPSPDLDLV YRVSRKYEST GKPLSKAVYD GIHRYLTSVA RFDEAGDTMK AMRDAAGCEP DNVTYSQLVF
401: GLCKAKRLEE ACGVLDQMEA DGCLPDVRTW TVLIQGYLKN NEVDKSFACF ENMLEKGLVI DSGLLDVMVG MFLSQNRIEE ACIFLKEKVK NANVKPWRTT
501: YKGVIDKLHE INKGEEALDL VQMMKQQNYH AHAKKPFDGT AVNVVAKMEV RSSENYSPLM YDLIHAFWGL PGLKHFVLTI VKQTRKDVSV MFEVDTQTSP
601: E

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.