Factsheet for Solyc03g112190.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046833	Potato	mitochondrion	78.78	90.81
VIT_17s0000g09330.t01	Wine grape	mitochondrion	46.76	57.86
CDX77895	Canola	mitochondrion	42.97	52.39
CDY21816	Canola	mitochondrion	42.7	52.32
Bra019536.1-P	Field mustard	mitochondrion	42.7	52.23
KRH03217	Soybean	mitochondrion	44.46	51.81
AT3G48250.1	Thale cress	plastid	42.57	50.72
GSMUA_Achr8P28550_001	Banana	cytosol	31.08	46.65
KRH03849	Soybean	mitochondrion	37.97	44.25
CDY39572	Canola	mitochondrion	34.46	44.04
Bra018070.1-P	Field mustard	mitochondrion	35.0	43.09
CDY48163	Canola	mitochondrion	34.73	42.76
Zm00001d041968_P001	Maize	mitochondrion	32.16	41.83
Os01t0970900-01	Rice	plastid	31.89	41.19
EES04293	Sorghum	mitochondrion	31.62	40.77
TraesCS3D01G530500.1	Wheat	mitochondrion	29.46	39.49
TraesCS3B01G592800.1	Wheat	mitochondrion	30.68	39.14
HORVU3Hr1G114240.1	Barley	mitochondrion	31.22	39.02
TraesCS3A01G525400.1	Wheat	mitochondrion	30.54	38.57
KRH03848	Soybean	cytosol, plastid	29.86	38.37
Zm00001d011788_P001	Maize	mitochondrion	30.41	37.63
Solyc02g089560.2.1	Tomato	mitochondrion	5.81	19.72

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824
GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0008380	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	UniProt:K4BK73	PFAM:PF01535	PFAM:PF12854	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF795	InterPro:Pentatricopeptide_repeat	EnsemblPlantsGene:Solyc03g112190.2	EnsemblPlants:Solyc03g112190.2.1	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI00027692FA	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr3:+:62678916..62685505

Molecular Weight (calculated)

85728.9 Da

IEP (calculated)

8.758

GRAVY (calculated)

-0.473

Length

740 amino acids

Sequence
(BLAST)

001: MNHGKRILSS LRLRNSLFFT QLSRATSSNH QVTQHLYLSP SLLTQIYTST SILGSSQNVF FSSKTESFVD IILSNDWSKQ LEKDLGKNDF PVTHEAVMYL
101: LKKLDKEPRK AGDFLKWVVK QKGFKPSSSM YSLMLRIYAN RDSMKDFWTT IKEMKENGFY IDEETYKSIY SIFRNLKMET DATALKHFYG RMIKDNAMGD
201: VAKDVSELIT KQEWGVEVER QLGEMKLSVS DNFVLRVLKE LREVGNPLKA FSFFKWVARN LDFQHSTVTY NGILRVLCRE ESIEEFWGVV KEMMSLGFEI
301: DLDTYIKISR HFQKIKMLKD AVELYELMMD GQFKPSLGHS RSKIIYDVIH RCLTNLGRFE EAEKITEAMR DAGFEPDNIT YSQLIYGLCK VRRLEEASKV
401: IDVMEECGCI PDIKTWTVLI QGHCFAGEVD KALFCFAKMM EKNVDTDADL LDVLLNGFLS QRRVFGAYQL LTELVNKFQM RPWQATYKLV IQKLLGERKF
501: EEALDLLRRM KKHNYPPFPE PFLQYISKSG TVEDAVEFLK ALSVKDYPSV SAYQHVFQSF FAEGRHSEAK DLLYKCPYHI RQHPAICGLF GSSNSNSGKM
601: KKKQEPHQDE EHDVEILKAV AQAWHGHSSS RGTTAEFDAH RHNFKNKPSR FKLEAMNKAT SREYDGTISR WDFSQSLWDS YEILNVSKKL ETGLMLDHPL
701: DGSIRIGQKR KESKNSLRNL LNRVSSRRYN DADSTLDKDG

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.