Factsheet for PGSC0003DMT400046833

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g112190.2.1	Tomato	mitochondrion	90.81	78.78
VIT_17s0000g09330.t01	Wine grape	mitochondrion	57.17	61.37
CDX77895	Canola	mitochondrion	51.56	54.53
CDY21816	Canola	mitochondrion	51.09	54.3
Bra019536.1-P	Field mustard	mitochondrion	51.09	54.21
KRH03217	Soybean	mitochondrion	53.12	53.7
AT3G48250.1	Thale cress	plastid	50.78	52.5
GSMUA_Achr8P28550_001	Banana	cytosol	38.63	50.3
KRH03849	Soybean	mitochondrion	45.64	46.14
CDY39572	Canola	mitochondrion	40.81	45.25
Bra018070.1-P	Field mustard	mitochondrion	41.59	44.43
CDY48163	Canola	mitochondrion	41.43	44.26
Zm00001d041968_P001	Maize	mitochondrion	38.94	43.94
Os01t0970900-01	Rice	plastid	38.94	43.63
EES04293	Sorghum	mitochondrion	38.63	43.21
TraesCS3D01G530500.1	Wheat	mitochondrion	36.14	42.03
TraesCS3B01G592800.1	Wheat	mitochondrion	37.54	41.55
HORVU3Hr1G114240.1	Barley	mitochondrion	38.16	41.39
TraesCS3A01G525400.1	Wheat	mitochondrion	37.69	41.3
KRH03848	Soybean	cytosol, plastid	36.6	40.8
Zm00001d011788_P001	Maize	mitochondrion	36.92	39.63
PGSC0003DMT400026059	Potato	mitochondrion	18.38	18.13

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:102583268	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	InterPro:IPR002885	InterPro:IPR011990
UniProt:M1BJQ5	PFAM:PF01535	PFAM:PF13041	EnsemblPlantsGene:PGSC0003DMG400018187	PGSC:PGSC0003DMG400018187	EnsemblPlants:PGSC0003DMT400046833
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF795	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf
UniParc:UPI000296D2A7	RefSeq:XP_006344474.1	SEG:seg	:	:	:

Description

Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400018187]

Coordinates

chr3:+:52001613..52006705

Molecular Weight (calculated)

74188.7 Da

IEP (calculated)

8.248

GRAVY (calculated)

-0.298

Length

642 amino acids

Sequence
(BLAST)

001: MNHGKRILSS LRLRNSLFFT QLSRAPSSNH QVTQHLNLSP SLLTQIYTST SILGASQNVF FSSKTESFVD IILSNDWSKQ LEKDLGKNDL PVTHEAVMYL
101: LKKLDKEPQK AGDFLKWVVK QNGFKPSSSM YSLMLRIYAN RDSMKDFWTT IKEMKENGFY IDEETYKSIH SIFRNLKMET DATALKHFYG RMIKDNAMGD
201: VAKDVSELIT KHEWGVEVER QLGEMKLPVS DNFVLRVLKE LREIGYPLKA FSFFKWVARN LDFQHTTITY NGILRVLCRE ESIEEFWGVV KEMMSLGFEI
301: DLDTYIKISR HFQKIKMLKD AVELYELMMD GQFKPSLGEC NILLRSIAQS HPSDLDLLFR VVEKFEAAGH SRSKIIYDVI HRCLTNLGRF EEAEKITEAM
401: RDAGFEPDNI TYSQLIYGLC KVRRLEEASK VIDVMEECGC IPDIKTWTVL IQGHCFAGEV DKALFCFAKM MERNVDTDAD LLDVLLNGFL SQRRVFGAYQ
501: LLTELVNKFQ MRPWQATYKL VIQKLLGERK FEEALDLLRR MKKHNYPPFP EPFLQYISKS GTVEDAVEFL KALSVKDYPS VSAYQHVFQS FFAEGRHSEA
601: KDLLYKCPHH IRQHPAICGL FGSSNSNSGK VKRFPRQSST SV

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.