Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 5
- nucleus 1
- cytosol 1
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g089560.2.1 | Tomato | mitochondrion | 28.57 | 85.32 |
| VIT_14s0083g00610.t01 | Wine grape | mitochondrion | 52.84 | 52.92 |
| KRH01461 | Soybean | nucleus | 48.85 | 50.56 |
| KRH45172 | Soybean | mitochondrion | 47.16 | 48.89 |
| AT3G02490.1 | Thale cress | mitochondrion | 43.63 | 42.71 |
| CDX91994 | Canola | mitochondrion | 42.4 | 42.33 |
| CDX69485 | Canola | mitochondrion | 41.94 | 42.19 |
| Bra008660.1-P | Field mustard | mitochondrion | 41.94 | 42.0 |
| CDY26480 | Canola | mitochondrion | 42.4 | 41.95 |
| CDX74255 | Canola | mitochondrion | 41.94 | 41.87 |
| Bra001047.1-P | Field mustard | mitochondrion | 41.78 | 41.72 |
| AT5G15980.1 | Thale cress | mitochondrion | 42.7 | 41.62 |
| GSMUA_Achr1P09410_001 | Banana | mitochondrion | 33.64 | 35.73 |
| EES04708 | Sorghum | mitochondrion, plastid | 29.95 | 32.07 |
| TraesCS6B01G188700.1 | Wheat | mitochondrion | 29.49 | 32.05 |
| TraesCS6D01G149700.1 | Wheat | mitochondrion | 29.19 | 31.93 |
| HORVU6Hr1G032550.1 | Barley | plastid | 30.26 | 31.32 |
| TraesCS6A01G162500.1 | Wheat | plastid | 30.11 | 30.29 |
| PGSC0003DMT400046833 | Potato | mitochondrion | 18.13 | 18.38 |
Protein Annotations
| Gene3D:1.25.40.10 | EntrezGene:102591489 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | UniProt:M1AML0 | PFAM:PF01535 | PFAM:PF12854 | EnsemblPlantsGene:PGSC0003DMG400010054 |
| PGSC:PGSC0003DMG400010054 | EnsemblPlants:PGSC0003DMT400026059 | PFscan:PS51375 | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF350 | InterPro:Pentatricopeptide_repeat |
| SignalP:SignalP-noTM | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf | UniParc:UPI000296DCEC | RefSeq:XP_006338305.1 | SEG:seg |
Description
Pentatricopeptide repeat-containing protein [Source:PGSC_GENE;Acc:PGSC0003DMG400010054]
Coordinates
chr2:+:45067252..45069797
Molecular Weight (calculated)
74286.1 Da
IEP (calculated)
8.309
GRAVY (calculated)
-0.328
Length
651 amino acids
Sequence
(BLAST)
(BLAST)
001: MRNQQRWLLL LLRHHSLAQP HISRHHINQS PFQVNRSVST IASSTIHSRT SHMLPYQSLT VRSFSTSELA VEHKDSDQIA VLTGIFSKPN RSNEEIKLDL
101: ESNNVTVTHD LVIRALRSFN TAPDAAHKLF NWVKENESER LSSKVYNYML GILGSNGFVK EFWIMVEIMK SKGYGVSRGT FNRAIEKFEK EKLSGDLEKL
201: KKLYGSELAD NSSEEVCSRV CKLIRGNVWG DDVEKQLRES KFEFSSELIS MVLEKLECET NKALIYFRWI EESGLFKHNE QTFNAIARVL GREEFSEKFW
301: KLVDEMRTAG FEMEKETYIR VLDNFVKRKM IKDAVNLYEF AMVGINKPSS EDCTFLLKKI VVSKELDLEL FSKVLRVFTE SGNSLTSANL DAILKSLTSV
401: DRFGECNKIL KAMEDAGFTP SHNQQRKIAF NLGSGGKDKE SNEFMNYIES TVSTPNSKTW TSLIEGYCEA GDLAKASEAF EMMIEKEGSS HAGYALELLV
501: SLHCRKRRAI HAFNLVEKMV NEKELHVWHT TYKFLIGKLL AQRGFEEALD VLHLMKSQDY PPFLNPFIKY LSKTGSADDA LEFTAAVTLK KLPSTSVFLN
601: LFEAYFKAGR RSEAQDFLAI CPRYIRNHAD VLNLFCSKKP QKATATIPVT A
101: ESNNVTVTHD LVIRALRSFN TAPDAAHKLF NWVKENESER LSSKVYNYML GILGSNGFVK EFWIMVEIMK SKGYGVSRGT FNRAIEKFEK EKLSGDLEKL
201: KKLYGSELAD NSSEEVCSRV CKLIRGNVWG DDVEKQLRES KFEFSSELIS MVLEKLECET NKALIYFRWI EESGLFKHNE QTFNAIARVL GREEFSEKFW
301: KLVDEMRTAG FEMEKETYIR VLDNFVKRKM IKDAVNLYEF AMVGINKPSS EDCTFLLKKI VVSKELDLEL FSKVLRVFTE SGNSLTSANL DAILKSLTSV
401: DRFGECNKIL KAMEDAGFTP SHNQQRKIAF NLGSGGKDKE SNEFMNYIES TVSTPNSKTW TSLIEGYCEA GDLAKASEAF EMMIEKEGSS HAGYALELLV
501: SLHCRKRRAI HAFNLVEKMV NEKELHVWHT TYKFLIGKLL AQRGFEEALD VLHLMKSQDY PPFLNPFIKY LSKTGSADDA LEFTAAVTLK KLPSTSVFLN
601: LFEAYFKAGR RSEAQDFLAI CPRYIRNHAD VLNLFCSKKP QKATATIPVT A
001: MRYQWRSLLF RSYRSSPRPF LSHHSRFQVI SNSTRSFSSF LHERFGVQQR QCLFALRSPL ASSVSRRFSS ESAIEEKLPA ETVVIDVFSR LNGKDEITKE
101: LDSNDVVISH ELALRVLREL ESSPDVAGRF FKWGLEAYPQ KLSSKSYNTM LRIFGVNGLV DEFWRLVDDM KKKGHGVSAN VRDRVGDKFK KDGLENDLER
201: LKELFASGSM DNSVDKVCNR VCKIVMKEVW GADVEKQLRD LKLEFKSDVV KMVLEKLDVD PRKALLFFRW IDESGSFKHD EKTYNAMARV LGKEKFLDRF
301: QHMIEEIRSA GYEMEMETYV RVSARFCQTK MIKEAVELFE FAMAGSISNT PTPHCCSLLL KKIVTAKKLD MDLFTRTLKA YTGNGNVVPD VMLQHVLKSL
401: RSVDRFGQSN EVLKAMNEGG YVPSGDLQSV IASGLSRKGK KDEANELVNF MEASGNHLDD KAMASLVEGH CDAKDLEEAS ECFKKMIGKE GVSYAGYAFE
501: KLVLAYCNSF QARDVYKLFS ELVKQNQLKP WHSTYKIMVR NLLMKKVARD GGFEEALSLL PMMRNHGFPP FVDPFMDYLS NSGTSAEAFA FLKAVTSKKF
601: PSNSMVLRVF EAMLKSARHS EAQDLLSMSP SYIRRNAEVL ELFNTMKPEK CSLEKPLPAP AQIEA
101: LDSNDVVISH ELALRVLREL ESSPDVAGRF FKWGLEAYPQ KLSSKSYNTM LRIFGVNGLV DEFWRLVDDM KKKGHGVSAN VRDRVGDKFK KDGLENDLER
201: LKELFASGSM DNSVDKVCNR VCKIVMKEVW GADVEKQLRD LKLEFKSDVV KMVLEKLDVD PRKALLFFRW IDESGSFKHD EKTYNAMARV LGKEKFLDRF
301: QHMIEEIRSA GYEMEMETYV RVSARFCQTK MIKEAVELFE FAMAGSISNT PTPHCCSLLL KKIVTAKKLD MDLFTRTLKA YTGNGNVVPD VMLQHVLKSL
401: RSVDRFGQSN EVLKAMNEGG YVPSGDLQSV IASGLSRKGK KDEANELVNF MEASGNHLDD KAMASLVEGH CDAKDLEEAS ECFKKMIGKE GVSYAGYAFE
501: KLVLAYCNSF QARDVYKLFS ELVKQNQLKP WHSTYKIMVR NLLMKKVARD GGFEEALSLL PMMRNHGFPP FVDPFMDYLS NSGTSAEAFA FLKAVTSKKF
601: PSNSMVLRVF EAMLKSARHS EAQDLLSMSP SYIRRNAEVL ELFNTMKPEK CSLEKPLPAP AQIEA
Arabidopsis Description
Pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M891]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.