CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01461	Soybean	nucleus	87.74	87.6
VIT_14s0083g00610.t01	Wine grape	mitochondrion	55.25	53.38
PGSC0003DMT400026059	Potato	mitochondrion	48.89	47.16
CDX74255	Canola	mitochondrion	46.97	45.25
AT3G02490.1	Thale cress	mitochondrion	47.61	44.96
Bra001047.1-P	Field mustard	mitochondrion	46.66	44.94
CDX91994	Canola	mitochondrion	46.18	44.48
AT5G15980.1	Thale cress	mitochondrion	46.5	43.71
Bra008660.1-P	Field mustard	mitochondrion	44.27	42.77
CDX69485	Canola	mitochondrion	43.79	42.5
CDY26480	Canola	mitochondrion	43.95	41.95
Solyc02g089560.2.1	Tomato	mitochondrion	12.58	36.24
GSMUA_Achr1P09410_001	Banana	mitochondrion	35.35	36.22
TraesCS6B01G188700.1	Wheat	mitochondrion	32.17	33.72
TraesCS6D01G149700.1	Wheat	mitochondrion	31.21	32.94
HORVU6Hr1G032550.1	Barley	plastid	32.96	32.91
EES04708	Sorghum	mitochondrion, plastid	31.69	32.73
TraesCS6A01G162500.1	Wheat	plastid	32.32	31.38
KRH03217	Soybean	mitochondrion	18.79	18.58
KRH03849	Soybean	mitochondrion	18.47	18.27
KRH03848	Soybean	cytosol, plastid	14.65	15.97

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100786212	MapMan:35.1	EMBL:ACUP02005003	EnsemblPlantsGene:GLYMA_08G255500	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	UniProt:I1KWN6	InterPro:IPR002885	InterPro:IPR011990	EnsemblPlants:KRH45172
ProteinID:KRH45172	ProteinID:KRH45172.1	PFAM:PF01535	PFAM:PF12854	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF350	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002337C4C	SEG:seg

Description

hypothetical protein

Coordinates

chr8:-:22648209..22651025

Molecular Weight (calculated)

70944.0 Da

IEP (calculated)

8.661

GRAVY (calculated)

-0.135

Length

628 amino acids

Sequence
(BLAST)

001: MRHQWRLLHH LLRFRDRILN HSQVLPSSSS IPCRFTANST FQLNPSFRHF SSEPVLAQAD TDNLLVVDIF SKPADSEDFK TLLDSNRVMI THDAVLAVLW
101: KLDSNVEAAR RFFLWVSENH PERLSSKCYN SMLRVLGTNG VVHEFWDLVD VMKKKGYGVS KGVKEIVLES FEKGGMVADV AKLKGLYDNL NEKNIAIVCR
201: IVRNNVWDDD VERQIKDLNV GFSGDVVKMV LESLASEPAK ALIFFRWLEE SGMFKQDGAT YNAMARVLGR EDSIDRFWKL VGDMRNAGFE MEFETFVKVL
301: GRFCKRRMVK DAVELYEFAM TGVNKPTVQC CVFLLRKVAA GKELDMDLFL RVLKVFTGSG NLLTDSMADA VLKTLTSVGR TGEWNKVLKE MEIVGCCRCN
401: LQSKIAYRLG AAGNKEQAHE FMNRIEASRS SPDRKTWDSL IEGHCVAGNL DKAFESFKEI VEKEGVASAG YSFDVLMNSY CQMNRAVDAS KILCRLVNEK
501: KLKPWHSTYK LLVTKLLVQG GFTDALNILG LMRTLGFPPF TDPFIEHLSK SGSGNAAALF LKAMTSKRFP STSMFLCMFE AFFKNGRHEE AQNFLSKCPR
601: YIRNHADVLN LFCSMNSKEA ASSGMLAA

Best Arabidopsis Sequence Match ( AT3G02490.1 )
(BLAST)

001: MRYQWRSLLF RSYRSSPRPF LSHHSRFQVI SNSTRSFSSF LHERFGVQQR QCLFALRSPL ASSVSRRFSS ESAIEEKLPA ETVVIDVFSR LNGKDEITKE
101: LDSNDVVISH ELALRVLREL ESSPDVAGRF FKWGLEAYPQ KLSSKSYNTM LRIFGVNGLV DEFWRLVDDM KKKGHGVSAN VRDRVGDKFK KDGLENDLER
201: LKELFASGSM DNSVDKVCNR VCKIVMKEVW GADVEKQLRD LKLEFKSDVV KMVLEKLDVD PRKALLFFRW IDESGSFKHD EKTYNAMARV LGKEKFLDRF
301: QHMIEEIRSA GYEMEMETYV RVSARFCQTK MIKEAVELFE FAMAGSISNT PTPHCCSLLL KKIVTAKKLD MDLFTRTLKA YTGNGNVVPD VMLQHVLKSL
401: RSVDRFGQSN EVLKAMNEGG YVPSGDLQSV IASGLSRKGK KDEANELVNF MEASGNHLDD KAMASLVEGH CDAKDLEEAS ECFKKMIGKE GVSYAGYAFE
501: KLVLAYCNSF QARDVYKLFS ELVKQNQLKP WHSTYKIMVR NLLMKKVARD GGFEEALSLL PMMRNHGFPP FVDPFMDYLS NSGTSAEAFA FLKAVTSKKF
601: PSNSMVLRVF EAMLKSARHS EAQDLLSMSP SYIRRNAEVL ELFNTMKPEK CSLEKPLPAP AQIEA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M891]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.