CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 4
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH45172	Soybean	mitochondrion	87.6	87.74
VIT_14s0083g00610.t01	Wine grape	mitochondrion	55.96	54.15
PGSC0003DMT400026059	Potato	mitochondrion	50.56	48.85
AT3G02490.1	Thale cress	mitochondrion	48.65	46.02
CDX74255	Canola	mitochondrion	47.54	45.86
AT5G15980.1	Thale cress	mitochondrion	48.33	45.51
Bra001047.1-P	Field mustard	mitochondrion	47.06	45.4
CDX91994	Canola	mitochondrion	46.9	45.25
Bra008660.1-P	Field mustard	mitochondrion	45.63	44.15
CDX69485	Canola	mitochondrion	45.15	43.89
CDY26480	Canola	mitochondrion	44.99	43.01
GSMUA_Achr1P09410_001	Banana	mitochondrion	36.73	37.68
Solyc02g089560.2.1	Tomato	mitochondrion	13.04	37.61
TraesCS6B01G188700.1	Wheat	mitochondrion	34.18	35.89
TraesCS6D01G149700.1	Wheat	mitochondrion	32.75	34.62
EES04708	Sorghum	mitochondrion, plastid	33.39	34.54
HORVU6Hr1G032550.1	Barley	plastid	34.18	34.18
TraesCS6A01G162500.1	Wheat	plastid	33.86	32.92
KRH03849	Soybean	mitochondrion	18.76	18.58
KRH03217	Soybean	mitochondrion	18.44	18.27
KRH03848	Soybean	cytosol, plastid	14.79	16.15

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100798825	MapMan:35.1	EMBL:ACUP02011515	EnsemblPlantsGene:GLYMA_18G278400	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	UniProt:K7MV52	EnsemblPlants:KRH01461
ProteinID:KRH01461	ProteinID:KRH01461.1	PFAM:PF01535	PFAM:PF12854	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF350	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI000233EE56	SEG:seg

Description

hypothetical protein

Coordinates

chr18:-:55998387..56002158

Molecular Weight (calculated)

70938.5 Da

IEP (calculated)

9.263

GRAVY (calculated)

-0.194

Length

629 amino acids

Sequence
(BLAST)

001: MRHQWRLLHH LLRSRPRITY HSQVLPYSSS IPRRFAANST FPLNPSFRRF SSEPVLAQAD TDHLLVADIF SKPVDSEDFK TLLGSNRVSI THDAVLAVLG
101: KFDSNVDAAR RFFQWVSENH PERLSSKCYN SMLCVLGTNG FVDEFWDLVN VMKKKGYGVS KGVKERVLES FEKGGMDGDV AKLKGLFDNS KEKNIAIVCR
201: IVRNNVWGDD VEKQIEDLNV GFSSEVVKTV LESLVLEPVK ALIFFRWLEE SGLFKHDGRT YNAMARVLGR EDLIDRFWKL VGDMRSAGFE MEAETFVKVL
301: GRFCKRRMVK DAVELYEFAM AGANKPTVQC CVFLLRKVAA GKELDTDLFS RVLKVFTGNG NVLTDSVANA VLKSLTSVGR TGEWNKVLKE MEDCGFVAGG
401: SLQSKIAYRL GAAGNKEQAH EFMNRIEVSG SNPYRKTWES LIQGYCVAGN LDKAFESFKE IVEKEGVASA GYSFNVLMNS YCQMNRAVDA SKILCRLVNE
501: KQLKPWHSTY KLLVTKLLVQ GGFTDALNIL GLMRTHGFPP FTDPFIEHLS KSGSGDDAVL FLKAMTSKRF PSTSMFLRMF EAFFKHRRHE EAQNFLSKCP
601: RYIRNHADVL NLFCSLNSKE AASSSMLAA

Best Arabidopsis Sequence Match ( AT3G02490.1 )
(BLAST)

001: MRYQWRSLLF RSYRSSPRPF LSHHSRFQVI SNSTRSFSSF LHERFGVQQR QCLFALRSPL ASSVSRRFSS ESAIEEKLPA ETVVIDVFSR LNGKDEITKE
101: LDSNDVVISH ELALRVLREL ESSPDVAGRF FKWGLEAYPQ KLSSKSYNTM LRIFGVNGLV DEFWRLVDDM KKKGHGVSAN VRDRVGDKFK KDGLENDLER
201: LKELFASGSM DNSVDKVCNR VCKIVMKEVW GADVEKQLRD LKLEFKSDVV KMVLEKLDVD PRKALLFFRW IDESGSFKHD EKTYNAMARV LGKEKFLDRF
301: QHMIEEIRSA GYEMEMETYV RVSARFCQTK MIKEAVELFE FAMAGSISNT PTPHCCSLLL KKIVTAKKLD MDLFTRTLKA YTGNGNVVPD VMLQHVLKSL
401: RSVDRFGQSN EVLKAMNEGG YVPSGDLQSV IASGLSRKGK KDEANELVNF MEASGNHLDD KAMASLVEGH CDAKDLEEAS ECFKKMIGKE GVSYAGYAFE
501: KLVLAYCNSF QARDVYKLFS ELVKQNQLKP WHSTYKIMVR NLLMKKVARD GGFEEALSLL PMMRNHGFPP FVDPFMDYLS NSGTSAEAFA FLKAVTSKKF
601: PSNSMVLRVF EAMLKSARHS EAQDLLSMSP SYIRRNAEVL ELFNTMKPEK CSLEKPLPAP AQIEA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M891]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.