Factsheet for VIT_14s0083g00610.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 4
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01461	Soybean	nucleus	54.15	55.96
KRH45172	Soybean	mitochondrion	53.38	55.25
PGSC0003DMT400026059	Potato	mitochondrion	52.92	52.84
AT5G15980.1	Thale cress	mitochondrion	50.46	49.1
AT3G02490.1	Thale cress	mitochondrion	49.69	48.57
CDX74255	Canola	mitochondrion	47.54	47.39
Bra001047.1-P	Field mustard	mitochondrion	47.38	47.24
CDX69485	Canola	mitochondrion	46.92	47.14
CDY26480	Canola	mitochondrion	47.69	47.11
Bra008660.1-P	Field mustard	mitochondrion	47.08	47.08
CDX91994	Canola	mitochondrion	47.08	46.93
GSMUA_Achr1P09410_001	Banana	mitochondrion	38.77	41.11
Solyc02g089560.2.1	Tomato	mitochondrion	13.08	38.99
TraesCS6B01G188700.1	Wheat	mitochondrion	32.92	35.73
EES04708	Sorghum	mitochondrion, plastid	32.92	35.2
HORVU6Hr1G032550.1	Barley	plastid	33.85	34.98
TraesCS6D01G149700.1	Wheat	mitochondrion	32.0	34.96
TraesCS6A01G162500.1	Wheat	plastid	33.38	33.54
VIT_17s0000g09330.t01	Wine grape	mitochondrion	21.54	23.41

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100242865	wikigene:100242865	MapMan:35.1	EMBL:AM461431	ProteinID:CAN63553
ProteinID:CAN63553.1	ProteinID:CCB44066	ProteinID:CCB44066.1	UniProt:F6GVT1	EMBL:FN594955	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009451	GO:GO:0009987
GO:GO:0016787	GO:GO:0090305	InterPro:IPR002885	InterPro:IPR011990	EntrezGene:LOC100242865	wikigene:LOC100242865
PFAM:PF01535	PFAM:PF12854	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF350	InterPro:Pentatricopeptide_repeat
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0001984B64	ArrayExpress:VIT_14s0083g00610	EnsemblPlantsGene:VIT_14s0083g00610	EnsemblPlants:VIT_14s0083g00610.t01
unigene:Vvi.7667	RefSeq:XP_002278999	RefSeq:XP_002278999.1	:	:	:

Description

No Description!

Coordinates

chr14:+:22649341..22651396

Molecular Weight (calculated)

73422.2 Da

IEP (calculated)

7.178

GRAVY (calculated)

-0.166

Length

650 amino acids

Sequence
(BLAST)

001: MRNQWRLLLL RTHSRSPLSI SHIFSHFPVK SDHSSQTLRF FSSFLQGHSH HCVIDSTELR NFSGPRSRSF SSDLALEDKG LDHVVFTDIF SKPKGFDEIK
101: NEVESSDIVV SHELVLKVLE NLESNPEVAR SVFDWVLRAE SERLSSKSYN LMLGILGSNG FVSEFWDLVE VMKKKGYGVS KAAYVKALEN FEKEALGSDL
201: EKLRGLFASG SVDDSIQKIC SRVSKIIRSE VWGDNVEGQL HNLKVTFSGD LVAMVLENLG LEPMKALIFF RWVEESDLVK HDKQTYNAML RVLGREDCIE
301: RFWKVADEMR NAGYEMEVAT YFKVVGRFYK RKMIKEVVDL YEFAMSGANK PSMYDCTFLL RKIVVSKVLD ISLFSRVVRT YTEGGNILTK SMLDAILKSL
401: TSVGRFGECN KLLKAMEEGG YVVGSGMQNK IAFGLSSARK TDEANEFMNN MEDSDCRPNY RTWSSLIEGY CVAGDLDKAS DCFQKMVEKE GVSYAGYAFE
501: VLVNAYCCKG RSVDACGLLC DLASKEKFKP WHSTYKLLIS KLLVQGGFQA ALNLLGLMKD HEFPPFLDPF IEYVSRTGTG DDAITFLRAM TVKRFPSTSV
601: FLQTFEAFFK AGRHNEAQDF LSKCPGYIRN HADVLNLFYT MKSGEAAMAA

Best Arabidopsis Sequence Match ( AT3G02490.1 )
(BLAST)

001: MRYQWRSLLF RSYRSSPRPF LSHHSRFQVI SNSTRSFSSF LHERFGVQQR QCLFALRSPL ASSVSRRFSS ESAIEEKLPA ETVVIDVFSR LNGKDEITKE
101: LDSNDVVISH ELALRVLREL ESSPDVAGRF FKWGLEAYPQ KLSSKSYNTM LRIFGVNGLV DEFWRLVDDM KKKGHGVSAN VRDRVGDKFK KDGLENDLER
201: LKELFASGSM DNSVDKVCNR VCKIVMKEVW GADVEKQLRD LKLEFKSDVV KMVLEKLDVD PRKALLFFRW IDESGSFKHD EKTYNAMARV LGKEKFLDRF
301: QHMIEEIRSA GYEMEMETYV RVSARFCQTK MIKEAVELFE FAMAGSISNT PTPHCCSLLL KKIVTAKKLD MDLFTRTLKA YTGNGNVVPD VMLQHVLKSL
401: RSVDRFGQSN EVLKAMNEGG YVPSGDLQSV IASGLSRKGK KDEANELVNF MEASGNHLDD KAMASLVEGH CDAKDLEEAS ECFKKMIGKE GVSYAGYAFE
501: KLVLAYCNSF QARDVYKLFS ELVKQNQLKP WHSTYKIMVR NLLMKKVARD GGFEEALSLL PMMRNHGFPP FVDPFMDYLS NSGTSAEAFA FLKAVTSKKF
601: PSNSMVLRVF EAMLKSARHS EAQDLLSMSP SYIRRNAEVL ELFNTMKPEK CSLEKPLPAP AQIEA

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M891]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.