Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G149700.1 | Wheat | mitochondrion | 86.49 | 91.43 |
| TraesCS6B01G188700.1 | Wheat | mitochondrion | 86.49 | 90.82 |
| TraesCS6A01G162500.1 | Wheat | plastid | 88.71 | 86.24 |
| EES04708 | Sorghum | mitochondrion, plastid | 62.32 | 64.47 |
| GSMUA_Achr1P09410_001 | Banana | mitochondrion | 40.22 | 41.27 |
| KRH01461 | Soybean | nucleus | 34.18 | 34.18 |
| VIT_14s0083g00610.t01 | Wine grape | mitochondrion | 34.98 | 33.85 |
| KRH45172 | Soybean | mitochondrion | 32.91 | 32.96 |
| CDX69485 | Canola | mitochondrion | 32.27 | 31.38 |
| Bra008660.1-P | Field mustard | mitochondrion | 32.27 | 31.23 |
| PGSC0003DMT400026059 | Potato | mitochondrion | 31.32 | 30.26 |
| CDY26480 | Canola | mitochondrion | 31.32 | 29.94 |
| CDX91994 | Canola | mitochondrion | 30.21 | 29.14 |
| Bra001047.1-P | Field mustard | mitochondrion | 30.21 | 29.14 |
| CDX74255 | Canola | mitochondrion | 29.89 | 28.83 |
| AT5G15980.1 | Thale cress | mitochondrion | 30.05 | 28.29 |
| AT3G02490.1 | Thale cress | mitochondrion | 29.25 | 27.67 |
| Solyc02g089560.2.1 | Tomato | mitochondrion | 7.15 | 20.64 |
| HORVU3Hr1G114240.1 | Barley | mitochondrion | 15.42 | 16.39 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G032550.1 | EnsemblPlantsGene:HORVU6Hr1G032550 | Gene3D:1.25.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR002885 | InterPro:IPR011990 | InterPro:Pentatricopeptide_repeat | InterPro:TPR-like_helical_dom_sf | PANTHER:PTHR24015 | PANTHER:PTHR24015:SF986 |
| PFAM:PF01535 | PFscan:PS51375 | SEG:seg | TIGRFAMs:TIGR00756 | UniParc:UPI000B4834AA | UniProt:A0A287TU59 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:143196348..143198403
Molecular Weight (calculated)
69286.9 Da
IEP (calculated)
9.212
GRAVY (calculated)
-0.099
Length
629 amino acids
Sequence
(BLAST)
(BLAST)
001: ESNRVNPNRL NPHFQFQPPS SCAAAAAAAM LRAVLNSGGG RLCRLSSLLP HHRLMSGSSI AAIFFQPSLP ADPTTAIQSA GINLSHPNTI PALLVHPDLA
101: SNYPAASRFF SWAASHPDAA VLNSKCFNSM LQLAAANSDA AHFWSLVSSM RSKGYGISKT TLQAATESFR SNGMSKDADM IQKAFSAHAR NAAVAEACKI
201: LRSDADELSK LDKLNELGVE VTDEMVALVV EKVGQFPRQA MAFFNWVEQS AGAGINWGKA YNAMSKIIGR EDCIEEFREV LRKMSSKEVG MDKEVYVILI
301: DRFLKRKMFE DAVDLFRFAM GGTEKPSAQD FVFLLKKLVV RDDMDLKLVM RLVRIYQKAG NEVKASMFDA VIKSLRSVER LGESGRVLKA MEEGGFAPDS
401: TVHGKAVLAM CDAGNLETAR KHLARVEKSG HKLDPLVWSA LVQKYSLGDD VDMAVSCFPE MLERRSGNQV GSALEVLVYG LCRKKEAKEA FKVLKDLVLK
501: KDVVPWQSTY KYLIHKLIRQ GHLKEAFDVL GLMKSNGFPP YINPFVTHIL KSGTVDDALG LLNAMSSKEF PSRTVYMRLF QGLFKEGRHE IAQQLLSVSP
601: GSVRNHADVL DLFYKMKIEE PAAAEAAAL
101: SNYPAASRFF SWAASHPDAA VLNSKCFNSM LQLAAANSDA AHFWSLVSSM RSKGYGISKT TLQAATESFR SNGMSKDADM IQKAFSAHAR NAAVAEACKI
201: LRSDADELSK LDKLNELGVE VTDEMVALVV EKVGQFPRQA MAFFNWVEQS AGAGINWGKA YNAMSKIIGR EDCIEEFREV LRKMSSKEVG MDKEVYVILI
301: DRFLKRKMFE DAVDLFRFAM GGTEKPSAQD FVFLLKKLVV RDDMDLKLVM RLVRIYQKAG NEVKASMFDA VIKSLRSVER LGESGRVLKA MEEGGFAPDS
401: TVHGKAVLAM CDAGNLETAR KHLARVEKSG HKLDPLVWSA LVQKYSLGDD VDMAVSCFPE MLERRSGNQV GSALEVLVYG LCRKKEAKEA FKVLKDLVLK
501: KDVVPWQSTY KYLIHKLIRQ GHLKEAFDVL GLMKSNGFPP YINPFVTHIL KSGTVDDALG LLNAMSSKEF PSRTVYMRLF QGLFKEGRHE IAQQLLSVSP
601: GSVRNHADVL DLFYKMKIEE PAAAEAAAL
001: MRYQWRSLLF RSYRSSPRPF LSHHSRFQVI SNSTRSFSSF LHERFGVQQR QCLFALRSPL ASSVSRRFSS ESAIEEKLPA ETVVIDVFSR LNGKDEITKE
101: LDSNDVVISH ELALRVLREL ESSPDVAGRF FKWGLEAYPQ KLSSKSYNTM LRIFGVNGLV DEFWRLVDDM KKKGHGVSAN VRDRVGDKFK KDGLENDLER
201: LKELFASGSM DNSVDKVCNR VCKIVMKEVW GADVEKQLRD LKLEFKSDVV KMVLEKLDVD PRKALLFFRW IDESGSFKHD EKTYNAMARV LGKEKFLDRF
301: QHMIEEIRSA GYEMEMETYV RVSARFCQTK MIKEAVELFE FAMAGSISNT PTPHCCSLLL KKIVTAKKLD MDLFTRTLKA YTGNGNVVPD VMLQHVLKSL
401: RSVDRFGQSN EVLKAMNEGG YVPSGDLQSV IASGLSRKGK KDEANELVNF MEASGNHLDD KAMASLVEGH CDAKDLEEAS ECFKKMIGKE GVSYAGYAFE
501: KLVLAYCNSF QARDVYKLFS ELVKQNQLKP WHSTYKIMVR NLLMKKVARD GGFEEALSLL PMMRNHGFPP FVDPFMDYLS NSGTSAEAFA FLKAVTSKKF
601: PSNSMVLRVF EAMLKSARHS EAQDLLSMSP SYIRRNAEVL ELFNTMKPEK CSLEKPLPAP AQIEA
101: LDSNDVVISH ELALRVLREL ESSPDVAGRF FKWGLEAYPQ KLSSKSYNTM LRIFGVNGLV DEFWRLVDDM KKKGHGVSAN VRDRVGDKFK KDGLENDLER
201: LKELFASGSM DNSVDKVCNR VCKIVMKEVW GADVEKQLRD LKLEFKSDVV KMVLEKLDVD PRKALLFFRW IDESGSFKHD EKTYNAMARV LGKEKFLDRF
301: QHMIEEIRSA GYEMEMETYV RVSARFCQTK MIKEAVELFE FAMAGSISNT PTPHCCSLLL KKIVTAKKLD MDLFTRTLKA YTGNGNVVPD VMLQHVLKSL
401: RSVDRFGQSN EVLKAMNEGG YVPSGDLQSV IASGLSRKGK KDEANELVNF MEASGNHLDD KAMASLVEGH CDAKDLEEAS ECFKKMIGKE GVSYAGYAFE
501: KLVLAYCNSF QARDVYKLFS ELVKQNQLKP WHSTYKIMVR NLLMKKVARD GGFEEALSLL PMMRNHGFPP FVDPFMDYLS NSGTSAEAFA FLKAVTSKKF
601: PSNSMVLRVF EAMLKSARHS EAQDLLSMSP SYIRRNAEVL ELFNTMKPEK CSLEKPLPAP AQIEA
Arabidopsis Description
Pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M891]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.