Factsheet for Os01t0970900-01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 5
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G530500.1	Wheat	mitochondrion	70.86	73.55
TraesCS3A01G525400.1	Wheat	mitochondrion	73.47	71.84
HORVU3Hr1G114240.1	Barley	mitochondrion	74.17	71.79
TraesCS3B01G592800.1	Wheat	mitochondrion	72.6	71.72
Zm00001d041968_P001	Maize	mitochondrion	69.11	69.6
EES04293	Sorghum	mitochondrion	67.36	67.25
Zm00001d011788_P001	Maize	mitochondrion	66.67	63.88
GSMUA_Achr8P28550_001	Banana	cytosol	52.71	61.26
VIT_17s0000g09330.t01	Wine grape	mitochondrion	48.34	46.32
CDX77895	Canola	mitochondrion	43.8	41.35
Bra019536.1-P	Field mustard	mitochondrion	43.63	41.32
CDY21816	Canola	mitochondrion	43.46	41.23
AT3G48250.1	Thale cress	plastid	42.41	39.13
PGSC0003DMT400046833	Potato	mitochondrion	43.63	38.94
KRH03217	Soybean	mitochondrion	42.93	38.74
KRH03849	Soybean	mitochondrion	39.09	35.28
Bra018070.1-P	Field mustard	mitochondrion	36.65	34.94
CDY39572	Canola	mitochondrion	35.25	34.89
CDY48163	Canola	mitochondrion	36.3	34.61
Solyc03g112190.2.1	Tomato	mitochondrion	41.19	31.89
KRH03848	Soybean	cytosol, plastid	30.19	30.03

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EntrezGene:4323841	EMBL:AK063285	EMBL:AK101688	ProteinID:BAB63669.1
ProteinID:BAF07444.1	ProteinID:BAS76425.1	ProteinID:EAZ14984.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009451	GO:GO:0009987	GO:GO:0016787	GO:GO:0090305
InterPro:IPR002885	InterPro:IPR011990	EnsemblPlantsGene:Os01g0970900	EnsemblPlants:Os01t0970900-01	PFAM:PF01535	PFAM:PF12854
PFAM:PF13041	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF795	InterPro:Pentatricopeptide_repeat	UniProt:Q94DI0
TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI00000A86ED	RefSeq:XP_015640663.1	SEG:seg	:

Description

Pentatricopeptide repeat domain containing protein. (Os01t0970900-01);Pentatricopeptide repeat domain containing protein. (Os01t0970900-02)

Coordinates

chr1:-:42837595..42842605

Molecular Weight (calculated)

64112.5 Da

IEP (calculated)

6.801

GRAVY (calculated)

-0.314

Length

573 amino acids

Sequence
(BLAST)

001: MAPPPPPTAF SRLRRLFSTA AATATAPTPE SVLYSLRTLS KDPSVALAFF RRSQAGGHPL GSAAYNLMLR TLASHPTSAH SHFWPFLRDM NDAGHSIDQG
101: TYLAALASFK KASLTADYAS LTAHYAKAQE DAKGGTPTSA AADAVRALED GSDSDASAEL DEKLEGVDLP LTETAVARVL REVRDHPIKA LAFFRWAGRQ
201: IGYKHGSVSY NAMVRVLGRE ESMREFWDLI QEMKADGIHV DIDTYVKLSR QFQKRHMLTE AVELYELMMD GPYKPSKQDG PVLIRRIALG PSPDLELVYR
301: VVRKFEAVWE FKTKDVFDGI HRALTSNGRF DEAAEIVKRM KGEGHQPDNI TYSQLIFGLC KANRFDEARK ALDEMEAEGC VPDLKTWTML IQGHCAAGEV
401: EKALQYFTEM VEKNLEADAA LLDVMVKGLC SDDKIDASYA FFVEMVDKAN LSPWQGTYKH IIGELLRVKK LEEALGLLRS MKARKFPPFA DPFPTHIAKY
501: GTFDDARQFL KALTVNNKYP SPTAYLHVFK SFFTEGRYSE AQDLLYKCPF HIRKHPDVTE LFESIKVESE SAA

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.