Factsheet for GSMUA_Achr8P28550_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plastid 1
mitochondrion 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G530500.1	Wheat	mitochondrion	60.45	53.99
Os01t0970900-01	Rice	plastid	61.26	52.71
TraesCS3A01G525400.1	Wheat	mitochondrion	60.45	50.85
TraesCS3B01G592800.1	Wheat	mitochondrion	59.43	50.52
Zm00001d041968_P001	Maize	mitochondrion	58.01	50.26
HORVU3Hr1G114240.1	Barley	mitochondrion	60.04	50.0
EES04293	Sorghum	mitochondrion	56.39	48.43
Zm00001d011788_P001	Maize	mitochondrion	56.8	46.82
VIT_17s0000g09330.t01	Wine grape	mitochondrion	56.39	46.49
KRH03217	Soybean	mitochondrion	52.94	41.1
CDY21816	Canola	mitochondrion	50.3	41.06
CDX77895	Canola	mitochondrion	50.51	41.02
Bra019536.1-P	Field mustard	mitochondrion	50.3	40.99
AT3G48250.1	Thale cress	plastid	50.3	39.94
PGSC0003DMT400046833	Potato	mitochondrion	50.3	38.63
KRH03849	Soybean	mitochondrion	46.45	36.06
Bra018070.1-P	Field mustard	mitochondrion	41.58	34.11
CDY39572	Canola	mitochondrion	39.96	34.02
CDY48163	Canola	mitochondrion	41.38	33.94
KRH03848	Soybean	cytosol, plastid	36.92	31.6
Solyc03g112190.2.1	Tomato	mitochondrion	46.65	31.08
GSMUA_Achr1P09410_001	Banana	mitochondrion	19.88	15.99

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0008380	GO:GO:0009987	EnsemblPlantsGene:GSMUA_Achr8G28550_001	EnsemblPlants:GSMUA_Achr8P28550_001	EnsemblPlants:GSMUA_Achr8T28550_001
InterPro:IPR002885	InterPro:IPR011990	UniProt:M0TUF8	PFAM:PF01535	PFAM:PF12854	PFscan:PS51375
PANTHER:PTHR24015	PANTHER:PTHR24015:SF795	InterPro:Pentatricopeptide_repeat	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0002961711
SEG:seg	:	:	:	:	:

Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:GMGC_GENE;Acc:GSMUA_Achr8G28550_001]

Coordinates

chr8:-:31319344..31320825

Molecular Weight (calculated)

55498.8 Da

IEP (calculated)

6.558

GRAVY (calculated)

-0.249

Length

493 amino acids

Sequence
(BLAST)

001: MLRILGRPDH LTDFWAFLRS MHEVGHNVDQ GTYLTLLSDF KRHKLAAESA ALAQFYSRTA QHATSAAAVS AAARTILDSD DWNEGVEKKL ELPLTEVAVA
101: GVLREVRARP AQALAFFRWA GGRSGYDHGS VAYNALARVL AQEDSMGQFW DLIQEMKEKG HEMDIDTYIK VSRHLLKSRM MKEAVELYEL MMDGPYKPAI
201: QDCGMLLRQI ALYDAPDLDL VFRVVRKYEA AGYSLSKVVY DGIHRSLTSN GKFDEAEEIL KKMRLEGYEP DNITYSQLVY GLCKAKRLDD ACKVFDEMEA
301: AGCTPDLKTW TVLIQGHCTA GEVDKALELL TKMIEKNCEA DGDVLDVLVK GLCSNNRADA GCTLFHEMVE KVHVKPWQAT YKHLIQELLK SGMLEEALKL
401: LSSMKIHKFP PYADPFPSYI AKCGTTVDAE EFLKALTVNN YPSPAAYLHV FQSLFKEGRY SEAQDLLYKC PHHIRKNVDI SKLFGSIKSE KAS

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.