Factsheet for Zm00001d041968_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES04293	Sorghum	mitochondrion	90.69	89.9
Zm00001d011788_P001	Maize	mitochondrion	85.59	81.44
Os01t0970900-01	Rice	plastid	69.6	69.11
TraesCS3D01G530500.1	Wheat	mitochondrion	63.27	65.22
HORVU3Hr1G114240.1	Barley	mitochondrion	66.61	64.02
TraesCS3A01G525400.1	Wheat	mitochondrion	65.38	63.48
TraesCS3B01G592800.1	Wheat	mitochondrion	64.67	63.45
GSMUA_Achr8P28550_001	Banana	cytosol	50.26	58.01
VIT_17s0000g09330.t01	Wine grape	mitochondrion	47.8	45.48
Bra019536.1-P	Field mustard	mitochondrion	43.76	41.16
CDY21816	Canola	mitochondrion	43.59	41.06
CDX77895	Canola	mitochondrion	43.23	40.53
AT3G48250.1	Thale cress	plastid	43.41	39.77
KRH03217	Soybean	mitochondrion	43.59	39.06
PGSC0003DMT400046833	Potato	mitochondrion	43.94	38.94
KRH03849	Soybean	mitochondrion	38.84	34.8
CDY39572	Canola	mitochondrion	34.45	33.85
Bra018070.1-P	Field mustard	mitochondrion	35.5	33.61
CDY48163	Canola	mitochondrion	34.97	33.11
Solyc03g112190.2.1	Tomato	mitochondrion	41.83	32.16
KRH03848	Soybean	cytosol, plastid	30.76	30.38

Protein Annotations

EnsemblPlants:Zm00001d041968_P001	EnsemblPlants:Zm00001d041968_T001	EnsemblPlantsGene:Zm00001d041968	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF795	PFAM:PF01535	PFAM:PF12854	PFscan:PS51375	ProteinID:ONM34218.1	SEG:seg
TIGRFAMs:TIGR00756	UniParc:UPI0008451690	UniProt:A0A1D6N0A4	MapMan:35.1	:	:

Description

Pentatricopeptide repeat-containing protein chloroplastic

Coordinates

chr3:+:146006301..146008010

Molecular Weight (calculated)

63295.2 Da

IEP (calculated)

7.477

GRAVY (calculated)

-0.183

Length

569 amino acids

Sequence
(BLAST)

001: MAALPLLRRL LAHRRLLSTT ATTPAASSSN PPTPEAVLYA IHSLSKDPSQ ALAVFRRSAA AGKPVGSAAY NLMLRTLASH PSSAQRHFWP FLREMQEAGH
101: SVDQGTYLAA LASFKKASLT ADYASLTAHY DKFRKGDKSA AAAAAEAVRD HDAAGLDSRL ADIGLLPLTE TAVITVLREL REHPIKALAF FRWAGRQQGY
201: THSSVSYNAM ARVLGREESV PEFWELIREM KGAGMYVDID TYLKLSRNFQ KRHMVREAVE LYELMMDGPF KPGQQDGPII IRRISLGPSP DLELVNRVVN
301: KFEAVWGVKT KELLDGVHRA LTSNGLFDEA AEIVQTMRDQ GHQPDNITYS QLVYGLCKAD KLENARKVLD EMEAEGCVPD LKTWTLLIQG HCVAGDVDRA
401: VQYFTEMIEK GLDADGDVLD VILKGLCSHE KVEEAYSLFV EMVDKAELRP WQGTCQHLIG DLLRVNKLEE ALALLKTMKT CKFPPFADPF PPYIAKYGTV
501: EDARNFFKAL TVKTSPAPAA YLHVLKLFFA EGRYSEAQDL LYKCPIYIRK HPHVAKLFES IKIESASAS

Best Arabidopsis Sequence Match ( AT3G48250.1 )
(BLAST)

001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A

Arabidopsis Description

Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.