Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 4
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX77895 | Canola | mitochondrion | 81.16 | 83.03 |
| Bra019536.1-P | Field mustard | mitochondrion | 79.71 | 81.82 |
| CDY21816 | Canola | mitochondrion | 79.55 | 81.79 |
| CDY39572 | Canola | mitochondrion | 61.51 | 65.98 |
| Bra018070.1-P | Field mustard | mitochondrion | 62.96 | 65.06 |
| CDY48163 | Canola | mitochondrion | 62.8 | 64.89 |
| VIT_17s0000g09330.t01 | Wine grape | mitochondrion | 54.43 | 56.52 |
| KRH03217 | Soybean | mitochondrion | 53.14 | 51.97 |
| PGSC0003DMT400046833 | Potato | mitochondrion | 52.5 | 50.78 |
| GSMUA_Achr8P28550_001 | Banana | cytosol | 39.94 | 50.3 |
| KRH03849 | Soybean | mitochondrion | 46.7 | 45.67 |
| Zm00001d041968_P001 | Maize | mitochondrion | 39.77 | 43.41 |
| TraesCS3D01G530500.1 | Wheat | mitochondrion | 37.84 | 42.57 |
| Solyc03g112190.2.1 | Tomato | mitochondrion | 50.72 | 42.57 |
| EES04293 | Sorghum | mitochondrion | 39.29 | 42.51 |
| Os01t0970900-01 | Rice | plastid | 39.13 | 42.41 |
| HORVU3Hr1G114240.1 | Barley | mitochondrion | 40.26 | 42.23 |
| TraesCS3B01G592800.1 | Wheat | mitochondrion | 38.97 | 41.72 |
| TraesCS3A01G525400.1 | Wheat | mitochondrion | 39.13 | 41.47 |
| Zm00001d011788_P001 | Maize | mitochondrion | 37.52 | 38.96 |
| KRH03848 | Soybean | cytosol, plastid | 35.27 | 38.02 |
| AT3G02490.1 | Thale cress | mitochondrion | 18.52 | 17.29 |
| AT5G15980.1 | Thale cress | mitochondrion | 17.23 | 16.02 |
Protein Annotations
| Gene3D:1.25.40.10 | MapMan:35.1 | EntrezGene:823983 | UniProt:A0A178VIQ8 | ProteinID:AEE78391.1 | ArrayExpress:AT3G48250 |
| EnsemblPlantsGene:AT3G48250 | RefSeq:AT3G48250 | TAIR:AT3G48250 | RefSeq:AT3G48250-TAIR-G | EnsemblPlants:AT3G48250.1 | TAIR:AT3G48250.1 |
| ProteinID:CAB41173.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004518 |
| GO:GO:0004519 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 |
| GO:GO:0009451 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016787 | GO:GO:0090305 |
| InterPro:IPR002885 | InterPro:IPR011990 | RefSeq:NP_190408.1 | ProteinID:OAP05205.1 | PFAM:PF01535 | PFAM:PF13041 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007057 | PO:PO:0007064 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51375 |
| PANTHER:PTHR24015 | PANTHER:PTHR24015:SF795 | InterPro:Pentatricopeptide_repeat | UniProt:Q9STK5 | TIGRFAMs:TIGR00756 | InterPro:TPR-like_helical_dom_sf |
| UniParc:UPI00000AB966 | SEG:seg | : | : | : | : |
Description
Pentatricopeptide repeat-containing protein At3g48250, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9STK5]
Coordinates
chr3:-:17869515..17872032
Molecular Weight (calculated)
71036.6 Da
IEP (calculated)
8.225
GRAVY (calculated)
-0.260
Length
621 amino acids
Sequence
(BLAST)
(BLAST)
001: MYRSMAILSS LRHAYSQIST RSYLSRSKVG FSSNLSSPLD SFAIVPSRFL WKFRTFSSKP DSMLQLVLEN DWSKEVEEGL RKPDMSLTHE TAIYVLRKLE
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A
101: KYPEKAYYFL DWVLRDSGLS PSTPLYSIML RILVQQRSMK RFWMTLREMK QGGFYLDEDT YKTIYGELSK EKSKADAVAV AHFYERMLKE NAMSVVAGEV
201: SAVVTKGDWS CEVERELQEM KLVLSDNFVI RVLKELREHP LKALAFFHWV GGGGSSSGYQ HSTVTYNAAL RVLARPNSVA EFWSVVDEMK TAGYDMDLDT
301: YIKVSRQFQK SRMMAETVKL YEYMMDGPFK PSIQDCSLLL RYLSGSPNPD LDLVFRVSRK YESTGKSLSK AVYDGIHRSL TSVGRFDEAE EITKAMRNAG
401: YEPDNITYSQ LVFGLCKAKR LEEARGVLDQ MEAQGCFPDI KTWTILIQGH CKNNELDKAL ACFANMLEKG FDIDSNLLDV LIDGFVIHNK FEGASIFLME
501: MVKNANVKPW QSTYKLLIDK LLKIKKSEEA LDLLQMMKKQ NYPAYAEAFD GYLAKFGTLE DAKKFLDVLS SKDSPSFAAY FHVIEAFYRE GRLTDAKNLL
601: FICPHHFKTH PKISELFGAA A
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.