Factsheet for TraesCS5D01G149700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G196600.1
TraesCS2A01G320000.1	cytoskeleton, nucleus
TraesCS2B01G224200.1
TraesCS2B01G363300.1	cytoskeleton, nucleus
TraesCS2D01G204600.1
TraesCS2D01G343300.1	cytoskeleton, nucleus
TraesCS5A01G142400.1
TraesCS5B01G141100.1
TraesCS5D01G149700.1
TraesCSU01G188700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05510.1	TraesCS2A01G196600.1	AT2G22640.1	25262777
AT5G05510.1	TraesCS2B01G224200.1	AT2G22640.1	25262777
AT5G05510.1	TraesCS2D01G204600.1	AT2G22640.1	25262777
AT5G05510.1	TraesCS2A01G320000.1	AT3G25980.1	25262777
AT5G05510.1	TraesCS2B01G363300.1	AT3G25980.1	25262777
AT5G05510.1	TraesCS2D01G343300.1	AT3G25980.1	25262777
AT5G05510.1	TraesCS2A01G320000.1	AT3G25980.1	25262777
AT5G05510.1	TraesCS2B01G363300.1	AT3G25980.1	25262777
AT5G05510.1	TraesCS2D01G343300.1	AT3G25980.1	25262777
AT5G05510.1	TraesCS5A01G142400.1	AT5G05510.1	25262777
AT5G05510.1	TraesCS5B01G141100.1	AT5G05510.1	25262777
AT5G05510.1	TraesCS5D01G149700.1	AT5G05510.1	25262777
AT5G05510.1	TraesCSU01G188700.1	AT5G05510.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G142400.1	Wheat	nucleus	91.81	97.58
TraesCS5B01G141100.1	Wheat	nucleus, plastid	96.21	96.06
TraesCSU01G188700.1	Wheat	nucleus	90.29	95.97
HORVU5Hr1G045460.1	Barley	mitochondrion	91.81	93.51
HORVU7Hr1G029580.3	Barley	nucleus	88.01	93.4
Os11t0128700-00	Rice	nucleus	62.82	66.67
Os12t0125300-01	Rice	nucleus	62.22	65.92
EES09179	Sorghum	nucleus	60.39	64.4
Zm00001d023279_P001	Maize	nucleus	59.48	61.25
EES16550	Sorghum	mitochondrion, nucleus	61.3	56.42
Bra009117.1-P	Field mustard	nucleus	30.65	44.59
GSMUA_Achr5P14270_001	Banana	cytosol	35.36	43.31
CDX70146	Canola	nucleus	29.59	43.05
CDX98847	Canola	nucleus	28.53	42.06
AT5G05510.1	Thale cress	nucleus	30.05	42.04
KRH31175	Soybean	nucleus	31.41	39.35
KRG97697	Soybean	nucleus	30.8	38.89
Solyc06g051040.2.1	Tomato	cytosol, nucleus, plastid	32.47	36.39
VIT_13s0067g01530.t01	Wine grape	nucleus	31.56	34.38
TraesCS6D01G157200.1	Wheat	cytosol, nucleus, plastid	10.32	17.26

Protein Annotations

EnsemblPlants:TraesCS5D01G149700.1	EnsemblPlantsGene:TraesCS5D01G149700	Gene3D:1.25.40.430	GO:GO:0007049	GO:GO:0007094	GO:GO:0008150
GO:GO:0009987	GO:GO:0016043	InterPro:Bub1/Mad3	InterPro:IPR013212	InterPro:Mad3/Bub1_I	PANTHER:PTHR14030
PANTHER:PTHR14030:SF14	PFAM:PF08311	PFscan:PS51489	SMART:SM00777	MapMan:13.3.5.5.5	:

Description

No Description!

Coordinates

chr5D:-:238584381..238587004

Molecular Weight (calculated)

74294.5 Da

IEP (calculated)

7.404

GRAVY (calculated)

-0.801

Length

659 amino acids

Sequence
(BLAST)

001: MSVYAAEISK IAALISNPAS RRLLGCFSSR RRATDPTNTP MAAAADHQHG HIDKEKEKEL LSSVVGDIRC YSGSDPLRPW LRGIRRLEGS LPPATLREKL
101: PRFLQKCAEE FQDEPRYRDD PRYLRVWIQM MDYVKDAKPL LKKLERNRIG LKRAAFYMAY AIYYEKRRRF QEAEQMYRVG IQNLAEPIEE LHKSHDQFIY
201: RMELYRKRKD KEGMPSRVKP LPRCANQVDG QSRNYTELKS NPVQKLGSSS NSSLCRYPPL GHAKDGVPSR GTSGDNKNLS RCNSDDTVVV RFVGSALVGK
301: SETEDACHHG LVEPTINLKE AMDDINSMFL EPVEPETMLK KRSKRDQPKF NQQAGALHIF VDEELNSSDS NILHGKNTKS VHPKFSQQTS AFEIFVDEDC
401: PNGTNQNVGQ NRKSNKENSQ QTSGFEIFVD ENEPKGNDQN VMCHKNTKCP RALRDSARQQ GTGDFQKPFV GGFAILADDE DEQCANNDDG VRINSRSMHP
501: HNKLTMLHAE QADKETRHGE GENPLNFGLR EDTIIHRFVG SAVVDEPKVE NACHHGLVDP TINLKEAMSD INNMFGKPLN FQDGKKPNRK TNAVSERKAA
601: PVSGFCILAD DDISKDPAAK DKSSNSCTFG SESGLFEPTI TTRDVMSEIN DMFGMSLDF

Best Arabidopsis Sequence Match ( AT5G05510.1 )
(BLAST)

001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F

Arabidopsis Description

At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.