Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra009117.1-P | Field mustard | nucleus | 75.37 | 78.37 |
| CDX70146 | Canola | nucleus | 71.55 | 74.39 |
| CDX98847 | Canola | nucleus | 68.79 | 72.48 |
| KRH31175 | Soybean | nucleus | 51.8 | 46.39 |
| KRG97697 | Soybean | nucleus | 50.53 | 45.59 |
| Solyc06g051040.2.1 | Tomato | cytosol, nucleus, plastid | 51.17 | 40.99 |
| VIT_13s0067g01530.t01 | Wine grape | nucleus | 51.8 | 40.33 |
| GSMUA_Achr5P14270_001 | Banana | cytosol | 45.86 | 40.15 |
| EES09179 | Sorghum | nucleus | 44.37 | 33.82 |
| Os11t0128700-00 | Rice | nucleus | 43.52 | 33.01 |
| Os12t0125300-01 | Rice | nucleus | 43.31 | 32.8 |
| HORVU7Hr1G029580.3 | Barley | nucleus | 42.89 | 32.53 |
| TraesCSU01G188700.1 | Wheat | nucleus | 42.46 | 32.26 |
| TraesCS5A01G142400.1 | Wheat | nucleus | 42.46 | 32.26 |
| HORVU5Hr1G045460.1 | Barley | mitochondrion | 42.89 | 31.22 |
| Zm00001d023279_P001 | Maize | nucleus | 42.04 | 30.94 |
| TraesCS5B01G141100.1 | Wheat | nucleus, plastid | 42.46 | 30.3 |
| TraesCS5D01G149700.1 | Wheat | plastid | 42.04 | 30.05 |
| EES16550 | Sorghum | mitochondrion, nucleus | 43.74 | 28.77 |
| AT2G33560.2 | Thale cress | nucleus | 13.59 | 16.16 |
| AT2G20635.1 | Thale cress | cytosol | 11.25 | 10.1 |
Protein Annotations
| Gene3D:1.25.40.430 | MapMan:13.3.5.5.5 | EntrezGene:830434 | UniProt:A0A178UDA3 | ProteinID:AED90882.1 | ArrayExpress:AT5G05510 |
| EnsemblPlantsGene:AT5G05510 | RefSeq:AT5G05510 | TAIR:AT5G05510 | RefSeq:AT5G05510-TAIR-G | EnsemblPlants:AT5G05510.1 | TAIR:AT5G05510.1 |
| ProteinID:BAB11540.1 | EMBL:BT015091 | EMBL:BT020348 | InterPro:Bub1/Mad3 | GO:GO:0000003 | GO:GO:0000778 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004672 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006468 | GO:GO:0007049 |
| GO:GO:0007094 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016301 |
| GO:GO:0016740 | GO:GO:0019538 | GO:GO:0051754 | InterPro:IPR013212 | InterPro:Mad3/Bub1_I | RefSeq:NP_196170.1 |
| ProteinID:OAO91733.1 | PFAM:PF08311 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009005 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020100 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PFscan:PS51489 |
| PANTHER:PTHR14030 | PANTHER:PTHR14030:SF2 | UniProt:Q9FFG4 | SMART:SM00777 | UniParc:UPI00000A9CF9 | SEG:seg |
Description
At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
Coordinates
chr5:-:1630559..1632739
Molecular Weight (calculated)
54230.8 Da
IEP (calculated)
5.463
GRAVY (calculated)
-0.922
Length
471 amino acids
Sequence
(BLAST)
(BLAST)
001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.