Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Zm00001d003249_P001 | cytoskeleton, nucleus |
| Zm00001d023279_P001 | |
| Zm00001d025721_P001 | cytoskeleton, nucleus |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES16550 | Sorghum | mitochondrion, nucleus | 81.72 | 73.04 |
| HORVU7Hr1G029580.3 | Barley | nucleus | 62.66 | 64.57 |
| TraesCS5A01G142400.1 | Wheat | nucleus | 62.5 | 64.52 |
| Os11t0128700-00 | Rice | nucleus | 62.19 | 64.09 |
| Os12t0125300-01 | Rice | nucleus | 61.56 | 63.34 |
| TraesCSU01G188700.1 | Wheat | nucleus | 61.25 | 63.23 |
| HORVU5Hr1G045460.1 | Barley | mitochondrion | 62.66 | 61.98 |
| TraesCS5D01G149700.1 | Wheat | plastid | 61.25 | 59.48 |
| TraesCS5B01G141100.1 | Wheat | nucleus, plastid | 61.25 | 59.39 |
| Bra009117.1-P | Field mustard | nucleus | 31.56 | 44.59 |
| CDX70146 | Canola | nucleus | 30.47 | 43.05 |
| AT5G05510.1 | Thale cress | nucleus | 30.94 | 42.04 |
| GSMUA_Achr5P14270_001 | Banana | cytosol | 35.0 | 41.64 |
| CDX98847 | Canola | nucleus | 29.06 | 41.61 |
| KRG97697 | Soybean | nucleus | 31.88 | 39.08 |
| KRH31175 | Soybean | nucleus | 31.88 | 38.78 |
| Solyc06g051040.2.1 | Tomato | cytosol, nucleus, plastid | 33.28 | 36.22 |
| VIT_13s0067g01530.t01 | Wine grape | nucleus | 33.28 | 35.21 |
| Zm00001d015863_P001 | Maize | cytosol | 7.97 | 13.18 |
| Zm00001d021588_P002 | Maize | cytosol, plastid | 9.22 | 10.63 |
Protein Annotations
| EnsemblPlants:Zm00001d023279_P001 | EnsemblPlants:Zm00001d023279_T001 | EnsemblPlantsGene:Zm00001d023279 | EntrezGene:103640678 | Gene3D:1.25.40.430 | GO:GO:0007049 |
| GO:GO:0007094 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:Bub1/Mad3 | InterPro:IPR013212 |
| InterPro:Mad3/Bub1_I | PANTHER:PTHR14030 | PANTHER:PTHR14030:SF14 | PFAM:PF08311 | PFscan:PS51489 | ProteinID:AQK38829.1 |
| SEG:seg | SMART:SM00777 | UniParc:UPI0004DE8281 | UniProt:A0A1D6IRD9 | MapMan:13.3.5.5.5 | : |
Description
Mad3/BUB1 homology region 1
Coordinates
chr10:+:2032914..2036564
Molecular Weight (calculated)
71979.1 Da
IEP (calculated)
6.678
GRAVY (calculated)
-0.886
Length
640 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAAEDEK GLLSSVVGDI RCYSGSDPLR PWLRGMRRME RALPPATLRE KLPRFLQKCA QEFQDNSRYR DDPRYLRVWI QLMDYVTDAK PLLKTMERNG
101: IGLKRASFYM AYALYYEKHR RFNDAEKMYR LGIQNLAEPI GELHKAHEQF RFRMDSYKKK DKLQERMPRK VGSSATSMNQ VKGESRHYKE LKSNIKQTSE
201: SSSNPSLGPT KVGVLSRGNS GANNNLPRCN SDDTVVVRFI GSALVGKSET EDACHHGLVE PTINTKEALD AINSMFMEPL EPETVLKRQS KRENPNHNQQ
301: TRAFGIFVDE DEPSGNNTSM LQNNSMKQGH TKLSQQTSGF EIFVDEDVPN GSYQNGTQNR NSSKEQSGFE IFVDEDCANG NNQNAGQNRN CRKENTKLNQ
401: ERNKSELFVK EDEANDTVQN ALCHKSNRYP PRPLLSDSSR HQGESDFQKP FVGGFAILPD DEEPCEKSYG GANINCRTVQ PTHNTNNLLC PVQDDSGTRN
501: REGPHSVTSG LQEDTVIRRF VASSIDDEPK VENAWHHGLV DPTVNLKEAM DDINSMFGKP LNFKGEKTKR KTNAHSDGKA APISGFSILA DDDLKEGCTS
601: KASQSNSFKF GDENGLFEPT ITTRDVMAEI NDMFGMPLDL
101: IGLKRASFYM AYALYYEKHR RFNDAEKMYR LGIQNLAEPI GELHKAHEQF RFRMDSYKKK DKLQERMPRK VGSSATSMNQ VKGESRHYKE LKSNIKQTSE
201: SSSNPSLGPT KVGVLSRGNS GANNNLPRCN SDDTVVVRFI GSALVGKSET EDACHHGLVE PTINTKEALD AINSMFMEPL EPETVLKRQS KRENPNHNQQ
301: TRAFGIFVDE DEPSGNNTSM LQNNSMKQGH TKLSQQTSGF EIFVDEDVPN GSYQNGTQNR NSSKEQSGFE IFVDEDCANG NNQNAGQNRN CRKENTKLNQ
401: ERNKSELFVK EDEANDTVQN ALCHKSNRYP PRPLLSDSSR HQGESDFQKP FVGGFAILPD DEEPCEKSYG GANINCRTVQ PTHNTNNLLC PVQDDSGTRN
501: REGPHSVTSG LQEDTVIRRF VASSIDDEPK VENAWHHGLV DPTVNLKEAM DDINSMFGKP LNFKGEKTKR KTNAHSDGKA APISGFSILA DDDLKEGCTS
601: KASQSNSFKF GDENGLFEPT ITTRDVMAEI NDMFGMPLDL
001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
Arabidopsis Description
At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.