Factsheet for Solyc06g051040.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
plastid 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc03g043720.2.1
Solyc05g014370.2.1	cytoskeleton, nucleus
Solyc06g051040.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05510.1	Solyc03g043720.2.1	AT2G22640.1	25262777
AT5G05510.1	Solyc05g014370.2.1	AT3G25980.1	25262777
AT5G05510.1	Solyc05g014370.2.1	AT3G25980.1	25262777
AT5G05510.1	Solyc06g051040.2.1	AT5G05510.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra009117.1-P	Field mustard	nucleus	41.5	53.86
CDX70146	Canola	nucleus	40.82	52.98
CDX98847	Canola	nucleus	39.12	51.45
AT5G05510.1	Thale cress	nucleus	40.99	51.17
KRH31175	Soybean	nucleus	43.88	49.05
KRG97697	Soybean	nucleus	42.86	48.28
VIT_13s0067g01530.t01	Wine grape	nucleus	48.64	47.27
GSMUA_Achr5P14270_001	Banana	cytosol	38.78	42.38
EES09179	Sorghum	nucleus	37.59	35.76
Os12t0125300-01	Rice	nucleus	37.76	35.69
Os11t0128700-00	Rice	nucleus	37.24	35.27
HORVU7Hr1G029580.3	Barley	nucleus	37.07	35.1
TraesCS5A01G142400.1	Wheat	nucleus	36.22	34.35
TraesCSU01G188700.1	Wheat	nucleus	35.88	34.03
HORVU5Hr1G045460.1	Barley	mitochondrion	37.07	33.69
Zm00001d023279_P001	Maize	nucleus	36.22	33.28
TraesCS5D01G149700.1	Wheat	plastid	36.39	32.47
TraesCS5B01G141100.1	Wheat	nucleus, plastid	35.88	31.97
EES16550	Sorghum	mitochondrion, nucleus	37.59	30.87
Solyc04g082900.2.1	Tomato	nucleus	11.9	17.99
Solyc07g053820.2.1	Tomato	cytosol, nucleus, plastid	12.59	13.99

Protein Annotations

Gene3D:1.25.40.430	MapMan:13.3.5.5.5	InterPro:Bub1/Mad3	ncoils:Coil	GO:GO:0000003	GO:GO:0000778
GO:GO:0003674	GO:GO:0003824	GO:GO:0004672	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006468	GO:GO:0007049	GO:GO:0007094	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538
GO:GO:0051754	InterPro:IPR013212	UniProt:K4C5P7	InterPro:Mad3/Bub1_I	PFAM:PF08311	PFscan:PS51489
PANTHER:PTHR14030	PANTHER:PTHR14030:SF2	SMART:SM00777	EnsemblPlantsGene:Solyc06g051040.2	EnsemblPlants:Solyc06g051040.2.1	UniParc:UPI0002766D07
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:34139042..34142916

Molecular Weight (calculated)

66843.2 Da

IEP (calculated)

6.285

GRAVY (calculated)

-0.749

Length

588 amino acids

Sequence
(BLAST)

001: MSVMYNELFS SLISDIKSYN GKDPLLPWLR GIKKMKESLP PQLLKEKLPR FLQKCAQTFG TDRRYANDMR YLRVWLQLMD YVHDPKSVLK TMELNRIGMK
101: KSLFYQAYAL YYEKIKKFEA AEKMYQLGVQ KLAEPLDELH TSYEQFLHRM EQRKNKRIQH QEGKNKICSL GAKNTTLKNN EIKENNENLS GNEDNPVITE
201: DQLPNARSKH LNMKNEVAIS QGSRRESQVN ETTHGGPALQ KELWSDLSQK NYVGDTIETD RCRNFIGEDT VVVKFVGNAI VGKSDVEDAR HHGLVEPTIN
301: TKEAMHAINS MFREPLEPSL AGKHSRRNQP KVDQISNNGF EVFVDENTDS AVGSSDQAMT NGASLTQSTR VETQEPMQDP FQIYIDDDDS NDGMEGVHEV
401: NKLDMGNLHL TGCSIEGGIV KGFVFPSPTD ITSEYSRDPN VERPPQGRLR REDTVVYKFV GSTISEESAV ENVCHHGLVE PTINLKEAMD DINSMFGRPI
501: EFTRKSKPKK QGLAPKMERD GSRFLILPDD ESHHQPKSSL PTSSSKRDND LFEKTVCTKE AMDEINKMFI TLTLAPAMGL AFDRDHDP

Best Arabidopsis Sequence Match ( AT5G05510.1 )
(BLAST)

001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F

Arabidopsis Description

At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.