Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G062760.2 | |
| HORVU2Hr1G084050.1 | cytoskeleton, nucleus |
| HORVU5Hr1G045460.1 | |
| HORVU7Hr1G029580.3 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G045460.1 | Barley | mitochondrion | 100.0 | 95.98 |
| TraesCS5A01G142400.1 | Wheat | nucleus | 94.2 | 94.35 |
| TraesCSU01G188700.1 | Wheat | nucleus | 92.59 | 92.74 |
| TraesCS5D01G149700.1 | Wheat | plastid | 93.4 | 88.01 |
| TraesCS5B01G141100.1 | Wheat | nucleus, plastid | 92.59 | 87.12 |
| Os11t0128700-00 | Rice | nucleus | 66.83 | 66.83 |
| Os12t0125300-01 | Rice | nucleus | 66.18 | 66.08 |
| EES09179 | Sorghum | nucleus | 64.9 | 65.21 |
| Zm00001d023279_P001 | Maize | nucleus | 64.57 | 62.66 |
| EES16550 | Sorghum | mitochondrion, nucleus | 65.38 | 56.7 |
| Bra009117.1-P | Field mustard | nucleus | 33.49 | 45.92 |
| CDX70146 | Canola | nucleus | 32.21 | 44.15 |
| GSMUA_Achr5P14270_001 | Banana | cytosol | 37.52 | 43.31 |
| CDX98847 | Canola | nucleus | 31.08 | 43.18 |
| AT5G05510.1 | Thale cress | nucleus | 32.53 | 42.89 |
| KRH31175 | Soybean | nucleus | 33.98 | 40.11 |
| KRG97697 | Soybean | nucleus | 33.49 | 39.85 |
| Solyc06g051040.2.1 | Tomato | cytosol, nucleus, plastid | 35.1 | 37.07 |
| VIT_13s0067g01530.t01 | Wine grape | nucleus | 33.98 | 34.88 |
| HORVU6Hr1G034110.3 | Barley | nucleus | 9.66 | 14.63 |
| HORVU0Hr1G039990.19 | Barley | cytosol, nucleus | 6.76 | 14.0 |
Protein Annotations
| EnsemblPlants:HORVU7Hr1G029580.3 | EnsemblPlantsGene:HORVU7Hr1G029580 | Gene3D:1.25.40.430 | GO:GO:0007049 | GO:GO:0007094 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | InterPro:Bub1/Mad3 | InterPro:IPR013212 | InterPro:Mad3/Bub1_I | PANTHER:PTHR14030 |
| PANTHER:PTHR14030:SF14 | PFAM:PF08311 | PFscan:PS51489 | SEG:seg | SMART:SM00777 | UniParc:UPI000294E7BB |
| UniProt:M0UIQ1 | MapMan:13.3.5.5.5 | : | : | : | : |
Description
No Description!
Coordinates
chrchr7H:-:55587923..55590433
Molecular Weight (calculated)
70444.0 Da
IEP (calculated)
7.097
GRAVY (calculated)
-0.852
Length
621 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAADPQHG HIDMEKEKEL LSSVIGDIRC YSGSDPLRPW LRGIRRLEGA LPPATLREKL PRFLQKCAQE FQDEPRYRDD PRYLRVWIQM MDYVKDAKPL
101: LKKLERNRIG LKRAAFYMAY AIYYEKRRRF QDAEQMYRMG IQNLAEPIEE LHKSHDQFIY RMELYQKKKD KEGMPSRVKP LPRCANQVDG QSRNYAELKS
201: NPVQKLGSSS SSSSCRYPPL GHAKDGVLSR GTSGDNKNLS RCNSDDTVVV RFVGSALVGK SETEDACHHG LVEPTINLKE AMDDINSMFL EPVEPETMLK
301: KRSKRDRPKF NQQASALHIF VDEEQLDSND ANILHGKNTK SVHPNFGQQT SAFEIFVDED CPNGTNQNEG QNKKRNKENN QQTSGFEIFV DENEPKGNDQ
401: NDMCHKNTRC PPRPLRDSAR QQGTGDFQKP FVGGFAILAD DEDEQCANNY DGVRINSRSM HPHNKLTMLH SEQADKETRH VKGENPFIFG LREDTIVRRF
501: VGSAVVDEPK VENACHHGLV DPTINLKEAM SDINNMFGKP LNFQDGKKLN RKTNAVSERK AAPVSGFSIL ADDDISKDPA AKDKPSNSCK FGSESGLFEP
601: TITTRDVMSE INDMFGMSLD F
101: LKKLERNRIG LKRAAFYMAY AIYYEKRRRF QDAEQMYRMG IQNLAEPIEE LHKSHDQFIY RMELYQKKKD KEGMPSRVKP LPRCANQVDG QSRNYAELKS
201: NPVQKLGSSS SSSSCRYPPL GHAKDGVLSR GTSGDNKNLS RCNSDDTVVV RFVGSALVGK SETEDACHHG LVEPTINLKE AMDDINSMFL EPVEPETMLK
301: KRSKRDRPKF NQQASALHIF VDEEQLDSND ANILHGKNTK SVHPNFGQQT SAFEIFVDED CPNGTNQNEG QNKKRNKENN QQTSGFEIFV DENEPKGNDQ
401: NDMCHKNTRC PPRPLRDSAR QQGTGDFQKP FVGGFAILAD DEDEQCANNY DGVRINSRSM HPHNKLTMLH SEQADKETRH VKGENPFIFG LREDTIVRRF
501: VGSAVVDEPK VENACHHGLV DPTINLKEAM SDINNMFGKP LNFQDGKKLN RKTNAVSERK AAPVSGFSIL ADDDISKDPA AKDKPSNSCK FGSESGLFEP
601: TITTRDVMSE INDMFGMSLD F
001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
Arabidopsis Description
At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.