Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU2Hr1G062760.2 | |
| HORVU2Hr1G084050.1 | cytoskeleton, nucleus |
| HORVU5Hr1G045460.1 | |
| HORVU7Hr1G029580.3 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU7Hr1G029580.3 | Barley | nucleus | 95.98 | 100.0 |
| TraesCS5A01G142400.1 | Wheat | nucleus | 90.42 | 94.35 |
| TraesCSU01G188700.1 | Wheat | nucleus | 88.87 | 92.74 |
| TraesCS5D01G149700.1 | Wheat | plastid | 93.51 | 91.81 |
| TraesCS5B01G141100.1 | Wheat | nucleus, plastid | 92.74 | 90.91 |
| Os11t0128700-00 | Rice | nucleus | 64.14 | 66.83 |
| Os12t0125300-01 | Rice | nucleus | 63.52 | 66.08 |
| EES09179 | Sorghum | nucleus | 62.29 | 65.21 |
| Zm00001d023279_P001 | Maize | nucleus | 61.98 | 62.66 |
| EES16550 | Sorghum | mitochondrion, nucleus | 63.37 | 57.26 |
| Bra009117.1-P | Field mustard | nucleus | 32.15 | 45.92 |
| CDX70146 | Canola | nucleus | 30.91 | 44.15 |
| GSMUA_Achr5P14270_001 | Banana | cytosol | 36.01 | 43.31 |
| CDX98847 | Canola | nucleus | 29.83 | 43.18 |
| AT5G05510.1 | Thale cress | nucleus | 31.22 | 42.89 |
| KRH31175 | Soybean | nucleus | 32.61 | 40.11 |
| KRG97697 | Soybean | nucleus | 32.15 | 39.85 |
| Solyc06g051040.2.1 | Tomato | cytosol, nucleus, plastid | 33.69 | 37.07 |
| VIT_13s0067g01530.t01 | Wine grape | nucleus | 32.61 | 34.88 |
| HORVU6Hr1G034110.3 | Barley | nucleus | 9.74 | 15.37 |
| HORVU0Hr1G039990.19 | Barley | cytosol, nucleus | 6.49 | 14.0 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G045460.1 | EnsemblPlantsGene:HORVU5Hr1G045460 | Gene3D:1.25.40.430 | GO:GO:0007049 | GO:GO:0007094 | GO:GO:0008150 |
| GO:GO:0009987 | GO:GO:0016043 | InterPro:Bub1/Mad3 | InterPro:IPR013212 | InterPro:Mad3/Bub1_I | PANTHER:PTHR14030 |
| PANTHER:PTHR14030:SF14 | PFAM:PF08311 | PFscan:PS51489 | SEG:seg | SMART:SM00777 | UniParc:UPI000B4785C4 |
| UniProt:A0A287R191 | MapMan:13.3.5.5.5 | : | : | : | : |
Description
No Description!
Coordinates
chrchr5H:+:351953022..351956386
Molecular Weight (calculated)
73312.5 Da
IEP (calculated)
7.707
GRAVY (calculated)
-0.845
Length
647 amino acids
Sequence
(BLAST)
(BLAST)
001: ISNPASRRLL GCFSSRRRAI DPTNTPMAAA ADPQHGHIDM EKEKELLSSV IGDIRCYSGS DPLRPWLRGI RRLEGALPPA TLREKLPRFL QKCAQEFQDE
101: PRYRDDPRYL RVWIQMMDYV KDAKPLLKKL ERNRIGLKRA AFYMAYAIYY EKRRRFQDAE QMYRMGIQNL AEPIEELHKS HDQFIYRMEL YQKKKDKEGM
201: PSRVKPLPRC ANQVDGQSRN YAELKSNPVQ KLGSSSSSSS CRYPPLGHAK DGVLSRGTSG DNKNLSRCNS DDTVVVRFVG SALVGKSETE DACHHGLVEP
301: TINLKEAMDD INSMFLEPVE PETMLKKRSK RDRPKFNQQA SALHIFVDEE QLDSNDANIL HGKNTKSVHP NFGQQTSAFE IFVDEDCPNG TNQNEGQNKK
401: RNKENNQQTS GFEIFVDENE PKGNDQNDMC HKNTRCPPRP LRDSARQQGT GDFQKPFVGG FAILADDEDE QCANNYDGVR INSRSMHPHN KLTMLHSEQA
501: DKETRHVKGE NPFIFGLRED TIVRRFVGSA VVDEPKVENA CHHGLVDPTI NLKEAMSDIN NMFGKPLNFQ DGKKLNRKTN AVSERKAAPV SGFSILADDD
601: ISKDPAAKDK PSNSCKFGSE SGLFEPTITT RDVMSEINDM FGMSLDF
101: PRYRDDPRYL RVWIQMMDYV KDAKPLLKKL ERNRIGLKRA AFYMAYAIYY EKRRRFQDAE QMYRMGIQNL AEPIEELHKS HDQFIYRMEL YQKKKDKEGM
201: PSRVKPLPRC ANQVDGQSRN YAELKSNPVQ KLGSSSSSSS CRYPPLGHAK DGVLSRGTSG DNKNLSRCNS DDTVVVRFVG SALVGKSETE DACHHGLVEP
301: TINLKEAMDD INSMFLEPVE PETMLKKRSK RDRPKFNQQA SALHIFVDEE QLDSNDANIL HGKNTKSVHP NFGQQTSAFE IFVDEDCPNG TNQNEGQNKK
401: RNKENNQQTS GFEIFVDENE PKGNDQNDMC HKNTRCPPRP LRDSARQQGT GDFQKPFVGG FAILADDEDE QCANNYDGVR INSRSMHPHN KLTMLHSEQA
501: DKETRHVKGE NPFIFGLRED TIVRRFVGSA VVDEPKVENA CHHGLVDPTI NLKEAMSDIN NMFGKPLNFQ DGKKLNRKTN AVSERKAAPV SGFSILADDD
601: ISKDPAAKDK PSNSCKFGSE SGLFEPTITT RDVMSEINDM FGMSLDF
001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F
Arabidopsis Description
At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.