CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES07816
EES09179
EES12410	cytoskeleton, nucleus
EES16550

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05510.1	EES07816	AT2G22640.1	25262777
AT5G05510.1	EES12410	AT3G25980.1	25262777
AT5G05510.1	EES12410	AT3G25980.1	25262777
AT5G05510.1	EES09179	AT5G05510.1	25262777
AT5G05510.1	EES16550	AT5G05510.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0128700-00	Rice	nucleus	66.34	66.02
Os12t0125300-01	Rice	nucleus	66.34	65.92
EES16550	Sorghum	mitochondrion, nucleus	75.73	65.36
HORVU7Hr1G029580.3	Barley	nucleus	65.21	64.9
TraesCS5A01G142400.1	Wheat	nucleus	65.05	64.84
TraesCSU01G188700.1	Wheat	nucleus	64.24	64.03
HORVU5Hr1G045460.1	Barley	mitochondrion	65.21	62.29
TraesCS5D01G149700.1	Wheat	plastid	64.4	60.39
TraesCS5B01G141100.1	Wheat	nucleus, plastid	64.24	60.15
Bra009117.1-P	Field mustard	nucleus	34.63	47.24
CDX70146	Canola	nucleus	33.66	45.92
AT5G05510.1	Thale cress	nucleus	33.82	44.37
CDX98847	Canola	nucleus	32.04	44.3
GSMUA_Achr5P14270_001	Banana	cytosol	38.35	44.05
KRH31175	Soybean	nucleus	34.79	40.87
KRG97697	Soybean	nucleus	33.82	40.04
Solyc06g051040.2.1	Tomato	cytosol, nucleus, plastid	35.76	37.59
VIT_13s0067g01530.t01	Wine grape	nucleus	35.92	36.69
EES04683	Sorghum	cytosol	9.71	14.81
KXG36289	Sorghum	plastid	10.03	10.03

Protein Annotations

Gene3D:1.25.40.430	MapMan:13.3.5.5.5	InterPro:Bub1/Mad3	UniProt:C5Y3Y5	ncoils:Coil	EnsemblPlants:EES09179
ProteinID:EES09179	ProteinID:EES09179.2	GO:GO:0000003	GO:GO:0000778	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006468	GO:GO:0007049	GO:GO:0007094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0051754	InterPro:IPR013212
InterPro:Mad3/Bub1_I	PFAM:PF08311	PFscan:PS51489	PANTHER:PTHR14030	PANTHER:PTHR14030:SF14	SMART:SM00777
EnsemblPlantsGene:SORBI_3005G020600	UniParc:UPI0003C6F7B3	:	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:1911651..1914892

Molecular Weight (calculated)

69556.0 Da

IEP (calculated)

6.904

GRAVY (calculated)

-0.811

Length

618 amino acids

Sequence
(BLAST)

001: MATAATAEHE KELLSSVVDD IRSYSGSDPL RPWLRGMRKM ERALPPATLR EKLPRFMQKC AQQFQADARY RDDPRYLRVW IQLMDYVTDA KPLLKKMERN
101: RIGLKRASFY MAYALYYEKH RRFNDAEKMY CLGIQNLAEP IGELQKAHEQ FLLRIESYKR RKDKLQERMP RKAESSATVM NQVEGESRNC KELKSNTMQK
201: SRSNSNPSVG CYPPLGPAKV GMLCRGNSGA KKNLPRCNSD DTVVVRFVGS ALVGKSETED ACHHGLVEPT INTKEAMDAI NSMFLEPVEP ETMLKRRPKP
301: KKPNYDQQAS AFGIFVDEDE PRGNPNVLHN SSMNQDHQKF GQQTGGFVIF VDEDSPDGNG QNVRQNKNSK KENVKLNQET SAFEIFVDEN EANGSVQNAT
401: CHRKNRSPPR PLCDSSKHQG ESGFQKPFVG GFAILPDGDE EQCEKSVDSM NMNSRTVQPT NDHNTLLCPV RDDSGTRYHE GSHPASSGLG EDTVIHRFVG
501: STIDDESKVE NACHHGLVDP TVNLKEAMDD INNMFGRPLI FKGDRTKRKV NALLDRKTAP ASGFSILADD DLKDNPTSKA DQNNSCKIDA EDGLFEPTIT
601: TRDVMAEIND MFGMPLDF

Best Arabidopsis Sequence Match ( AT5G05510.1 )
(BLAST)

001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F

Arabidopsis Description

At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.