CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG97470	cytoskeleton, nucleus
KRG97697
KRH08024	cytoskeleton, nucleus
KRH31175
KRH31421	cytoskeleton, nucleus
KRH39504
KRH74448

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G05510.1	KRH39504	AT2G22640.1	25262777
AT5G05510.1	KRH74448	AT2G22640.1	25262777
AT5G05510.1	KRG97470	AT3G25980.1	25262777
AT5G05510.1	KRH08024	AT3G25980.1	25262777
AT5G05510.1	KRH31421	AT3G25980.1	25262777
AT5G05510.1	KRG97470	AT3G25980.1	25262777
AT5G05510.1	KRH08024	AT3G25980.1	25262777
AT5G05510.1	KRH31421	AT3G25980.1	25262777
AT5G05510.1	KRG97697	AT5G05510.1	25262777
AT5G05510.1	KRH31175	AT5G05510.1	25262777

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31175	Soybean	nucleus	86.21	85.55
CDX70146	Canola	nucleus	48.28	55.63
CDX98847	Canola	nucleus	46.93	54.81
Bra009117.1-P	Field mustard	nucleus	47.32	54.53
AT5G05510.1	Thale cress	nucleus	45.59	50.53
VIT_13s0067g01530.t01	Wine grape	nucleus	51.53	44.46
GSMUA_Achr5P14270_001	Banana	cytosol	45.59	44.24
Solyc06g051040.2.1	Tomato	cytosol, nucleus, plastid	48.28	42.86
Os11t0128700-00	Rice	nucleus	40.42	33.98
Os12t0125300-01	Rice	nucleus	40.42	33.92
EES09179	Sorghum	nucleus	40.04	33.82
HORVU7Hr1G029580.3	Barley	nucleus	39.85	33.49
TraesCS5A01G142400.1	Wheat	nucleus	38.7	32.58
TraesCSU01G188700.1	Wheat	nucleus	38.51	32.42
HORVU5Hr1G045460.1	Barley	mitochondrion	39.85	32.15
Zm00001d023279_P001	Maize	nucleus	39.08	31.88
TraesCS5D01G149700.1	Wheat	plastid	38.89	30.8
TraesCS5B01G141100.1	Wheat	nucleus, plastid	38.51	30.45
EES16550	Sorghum	mitochondrion, nucleus	39.08	28.49
KRH49504	Soybean	cytoskeleton, cytosol, nucleus	11.88	16.15
KRG89179	Soybean	cytosol	11.69	15.89
KRH25625	Soybean	cytosol	13.6	13.37
KRH55929	Soybean	nucleus	13.03	12.85

Protein Annotations

Gene3D:1.25.40.430	EntrezGene:100783816	MapMan:13.3.5.5.5	UniProt:A0A0R0F3R1	EMBL:ACUP02010809	InterPro:Bub1/Mad3
ncoils:Coil	EnsemblPlantsGene:GLYMA_18G025300	GO:GO:0000003	GO:GO:0000778	GO:GO:0003674	GO:GO:0003824
GO:GO:0004672	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464
GO:GO:0006468	GO:GO:0007049	GO:GO:0007094	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0016043	GO:GO:0016301	GO:GO:0016740	GO:GO:0019538	GO:GO:0051754	InterPro:IPR013212
EnsemblPlants:KRG97697	ProteinID:KRG97697	ProteinID:KRG97697.1	InterPro:Mad3/Bub1_I	PFAM:PF08311	PFscan:PS51489
PANTHER:PTHR14030	PANTHER:PTHR14030:SF2	SMART:SM00777	UniParc:UPI000233F403	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:1868158..1870569

Molecular Weight (calculated)

59432.4 Da

IEP (calculated)

6.409

GRAVY (calculated)

-0.782

Length

522 amino acids

Sequence
(BLAST)

001: MANVDELLSS LISDVHAYTG KDPLLPWLRA IRKVKDTLPP KTLKEKLPAF LQKCAHTFEL DRRYRNDMRY LRVWLHLMDF VDDPKTLLRT METNHIGTKR
101: CEFYQAYALY YEKSKKSDEA EKMYHLGVKN LAEPLDKLQK SYEQFLQRME RKNNKRIQHQ EAKASRRPLS LKSFPSLDNK TEGSKSNGVD CVEGVQKGPR
201: IDNYAAKGVA DDKNIKTKKD ERKRFCGDDT VVVKFVDTAM VGKSEAEDAC HHGLVDPTIN MKEAMNAINS MFREPLETVP LGKKSHKNHS KEDRSTKNEF
301: EVLVDENLDN GIKPSGSLSL RNRTEASQPH QEPLQIYIDD EETSETSDVN LFEGGCTSSA SQPNGFVFLR SKDIPSKKSS DMDADSDRNS KFREDTVVCR
401: FVGSAILDEP EVENVCHHGL VDPTINLKEA MDDINNMFGK PIDFVRRRTT TKQEKAHQSI RGNDIGGFSI LADDELQEQE VPPPPPPKLL GKSKESDLFE
501: PTILTKEAID DINKMFNMPL DF

Best Arabidopsis Sequence Match ( AT5G05510.1 )
(BLAST)

001: MAKNENGYEN LLASLIVDIK SYSGKDHLLP WIRGVKKMKE SLPSQILNEK LPRFLQKCAE SFESDKRYKN DSRYIRVWLQ LMDFVDDPRA LLRTMEAKSI
101: GTKRSLFYQA YALHYEKMKR FEDAEKMYRL GVQNLAEPMD ELQKSYLQFV TRMERHKKKK TQRQEQKLSG KHHKVDERQQ HEPVLNFVDK AIVGKPEAEN
201: ACHHGLVDPT INMKEAMNTI NNMFKEPIET APLQRRSRQR SQNKENQGCN NSFEVFLDEN LECETGTSGK AKTSTTQCGS QPNQESFEIF IDDENTDETA
301: DENDEAGKAF VFLLPRDHSP ESSEEADRNT PPRARFREDT VVRRFVGSTI SDEPEAVENA CHHGLVDPTV NLKEAMEDIN NMFGEPINFV RPNRSKNKGK
401: AVVETKPNPA AGFSILEDDD EEEAEQEHQG KSQPTQRLPS KSDERELFEP TVCTKVALDE INKLFAMPMD F

Arabidopsis Description

At5g05510 [Source:UniProtKB/TrEMBL;Acc:Q9FFG4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.